Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GSN03_RS21075 Genome accession   NZ_CP047366
Coordinates   4099416..4101752 (-) Length   778 a.a.
NCBI ID   WP_000528053.1    Uniprot ID   -
Organism   Bacillus nitratireducens strain BM02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4094416..4106752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS21050 (GSN03_20885) - 4097066..4097410 (+) 345 WP_000209536.1 PH domain-containing protein -
  GSN03_RS21055 (GSN03_20890) - 4097453..4098520 (-) 1068 WP_000793104.1 AI-2E family transporter -
  GSN03_RS21060 (GSN03_20895) - 4098697..4098909 (+) 213 WP_000242544.1 hypothetical protein -
  GSN03_RS21065 (GSN03_20900) - 4098953..4099081 (-) 129 WP_001026264.1 YrzQ family protein -
  GSN03_RS21070 (GSN03_20905) - 4099100..4099288 (-) 189 WP_000469281.1 hypothetical protein -
  GSN03_RS21075 (GSN03_20910) recD2 4099416..4101752 (-) 2337 WP_000528053.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GSN03_RS21080 (GSN03_20915) - 4101860..4102519 (-) 660 WP_044737704.1 tetratricopeptide repeat protein -
  GSN03_RS21085 (GSN03_20920) mnmA 4102630..4103745 (-) 1116 WP_001038013.1 tRNA 2-thiouridine(34) synthase MnmA -
  GSN03_RS21090 (GSN03_20925) - 4103762..4104907 (-) 1146 WP_044737703.1 cysteine desulfurase family protein -
  GSN03_RS21095 (GSN03_20930) cymR 4104943..4105359 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87334.95 Da        Isoelectric Point: 5.2071

>NTDB_id=413050 GSN03_RS21075 WP_000528053.1 4099416..4101752(-) (recD2) [Bacillus nitratireducens strain BM02]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPE
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SIFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=413050 GSN03_RS21075 WP_000528053.1 4099416..4101752(-) (recD2) [Bacillus nitratireducens strain BM02]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACGAATGAAACATACGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCACTTTAAAGACCACCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACGGCCGAAAAAATCGTAGATCACCTTGGTGAGCATGCTATTTCTAAAATTATGGATG
ATCCTGATGCGTTAAATGGTGTTGTTAACAAACAAAAAGCGCAGGAAATATATGAGACAATTGTTGAACATCAAGGGTTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAAATCTATCAGCAATATAAAGAAAT
GACATTAGAAGTGATTCGTAATAATCCATATAAGCTTATTGAAGAAGTGGATGGGATTGGCTTTGGAAGAGCGGATGATA
TAGGGCGTGCATTAGGTATATCGGGTAATCACGACGACCGTGTACGTGCGGGCTGTTTTTATACATTAGAGAATGTTTCA
CTGCAACTCGGTCACGTTTATATGGGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCGTTATTCTACTCTGAAAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAATCAAGAAGAAACCCCTGAA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGGGAAATTGAAGAACAGCTAAAGGTACAGTATGCACCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGCTATTAACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGATTATCATTAAATCCGAATGAATATAGTGATGATAATCCATTTCCAATA
TTGTTAACGGCCCCAACAGGAAGAGCGGCGAAGCGCATGAGTGAATCGACAGGGCTTCCAGCTTGTACGATTCATCGTTT
GCTTGGTTGGACGCCAGAAGGGTCTTTCCAGCGCAATGAAACCGATCCGGTACAAGGAAAGTTACTCATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTAAATGCAGGAGCCATCCCAACGGTAAAACT
TACAGAAATTTATCGTCAGGCAGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGAACACTTCCACCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGGGCTCAAATTGTTGAAGTTGTAAAAAAAGTATGT
GAAAACGCGAAGACGAAAGGGTTTAGCGCAAGAGATGTACAAGTGTTGGCACCTATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAAAGTAAAGAAATTGCCTACGGTGACGTTGTGT
ATCGAAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTATTTAATGGTGATATTGGAGAAATTGTT
TCGATTTTTTATGCAAAAGAAAATGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGGATTGAAGTAACGTATAC
AAAGCCTGATTTGAACCAAATTACCCATGCATATTGCTGCTCGATTCATAAATCACAGGGTAGTGAATTCCCAATAGTTA
TTATGCCGATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCCAGTCTGGTGTAAATCGCCTTGATGACGCAATGCGTCAAACGACTTTAGC
TGGTCGATTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58

Multiple sequence alignment