Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GEOTH_RS05400 Genome accession   NC_015660
Coordinates   1057962..1060316 (+) Length   784 a.a.
NCBI ID   WP_003248953.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius C56-YS93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052962..1065316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOTH_RS05375 (Geoth_1071) - 1053751..1054407 (+) 657 WP_013876549.1 YczE/YyaS/YitT family protein -
  GEOTH_RS05380 (Geoth_1072) cymR 1054418..1054834 (+) 417 WP_003248949.1 cysteine metabolism transcriptional regulator CymR -
  GEOTH_RS05385 (Geoth_1073) - 1054855..1056000 (+) 1146 WP_013876550.1 cysteine desulfurase family protein -
  GEOTH_RS05390 (Geoth_1074) mnmA 1056017..1057132 (+) 1116 WP_003248951.1 tRNA 2-thiouridine(34) synthase MnmA -
  GEOTH_RS05395 (Geoth_1075) - 1057282..1057944 (+) 663 WP_003248952.1 tetratricopeptide repeat protein -
  GEOTH_RS05400 (Geoth_1076) recD2 1057962..1060316 (+) 2355 WP_003248953.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GEOTH_RS05405 (Geoth_1077) - 1060352..1060822 (+) 471 WP_003248954.1 PRC-barrel domain-containing protein -
  GEOTH_RS05410 (Geoth_1078) - 1060838..1061026 (+) 189 WP_003248955.1 hypothetical protein -
  GEOTH_RS20260 (Geoth_1079) - 1061040..1061174 (+) 135 WP_013400332.1 YrzQ family protein -
  GEOTH_RS05415 (Geoth_1080) - 1061274..1062335 (+) 1062 WP_003248956.1 AI-2E family transporter -
  GEOTH_RS05420 (Geoth_1081) alaS 1062663..1065296 (+) 2634 WP_013876551.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87891.41 Da        Isoelectric Point: 5.0081

>NTDB_id=41261 GEOTH_RS05400 WP_003248953.1 1057962..1060316(+) (recD2) [Parageobacillus thermoglucosidasius C56-YS93]
MQQPESFVFEGTSFIKGSYISTIFHNEANLYSVVRVRVEETNEAYDEQEVVVTGYFPKMNEHDTYIFYGKFHDHPKFGRQ
YVVDHFRKQFPNTKDGIIHYLSSDLFKGIGKKTAKAIVEALGENAISKILADPSVLDDVPKLSKQRAKELYDTLRAHEGL
EQTMIALSQFGFGPQLSMKIYQVYQDETLSVIQQNPYQLVEDVEGIGFGRADELGYRLGISGSHPARIRAACLFVIERDC
LQEGHVYVTERQLVTNIKQLLEAKRKETVSEEAIEQMLLMLSEEGKLIKEDEKFYIPSLYFAEKGIVTNVKRLLQQTEAV
MTFPESEFLLALGRLEERLSVQYAPTQKEAIRQALSSPLFILTGGPGTGKTTVIKGIVEIFADLHGFSLDPKDYTKDDPF
PILLAAPTGRAAKRMSEATGLPAVTIHRLLGWNGAEGFTHDEDEPISGKLLIVDEMSMVDTWLANQLFKSIPDGMQVILV
GDEDQLPSVGPGQVLKDLLQAGVIPTVRLTEVYRQAEGSSIIELAHQMKNGGLPPDLTAPKADRSFIRCQTSQVAEVVRQ
IADNARRKGFAVKDIQVLAPMYRGPAGIDRLNQVLQDLFNPKSEKKRELSVGDVIYRVGDKVLQLVNQPDDNVFNGDIGE
IVAIFYAKENTEKQDLVVVSFDGIEVTYSRQDLSQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLIICGEEEAFKLGVARSDDSSRQTTLTEKLQKILVPAVEGELPMEDANIGMENVSPYDFMDE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=41261 GEOTH_RS05400 WP_003248953.1 1057962..1060316(+) (recD2) [Parageobacillus thermoglucosidasius C56-YS93]
TTGCAGCAACCGGAATCATTTGTTTTCGAGGGAACTTCGTTTATAAAAGGTTCATATATTTCCACCATTTTTCATAATGA
AGCGAATTTGTATTCCGTCGTTCGCGTCCGGGTCGAAGAAACGAACGAAGCGTACGATGAACAAGAAGTTGTGGTGACCG
GATATTTCCCTAAAATGAACGAGCATGACACGTATATTTTTTACGGGAAATTTCATGACCATCCAAAGTTCGGCCGGCAA
TATGTTGTCGACCATTTCCGCAAACAATTCCCTAACACGAAAGACGGCATCATTCACTATTTATCCAGCGATTTATTTAA
AGGAATCGGGAAAAAAACGGCAAAAGCGATCGTCGAAGCGCTTGGCGAAAATGCCATTTCCAAAATTTTAGCGGATCCAA
GCGTGTTGGATGATGTTCCAAAATTGTCAAAGCAAAGGGCAAAAGAGCTGTATGATACGCTGCGTGCCCATGAAGGGCTG
GAACAGACGATGATCGCGCTTTCCCAGTTTGGTTTTGGCCCGCAATTGTCGATGAAAATTTATCAAGTATACCAAGATGA
AACACTCTCCGTTATTCAGCAAAACCCCTACCAGCTTGTCGAAGATGTCGAAGGAATCGGCTTTGGCCGCGCCGACGAAT
TAGGCTACCGGCTTGGCATTTCCGGCAGCCATCCTGCGCGCATTCGCGCGGCGTGTTTGTTTGTGATAGAACGGGATTGC
CTTCAAGAAGGGCATGTGTATGTGACAGAAAGGCAGCTTGTCACAAACATTAAACAGCTTTTGGAAGCAAAACGAAAAGA
AACAGTCAGTGAAGAAGCGATCGAGCAAATGTTGTTAATGCTTTCTGAAGAAGGAAAGCTAATCAAGGAAGATGAAAAAT
TTTATATTCCGTCGCTTTATTTTGCTGAAAAAGGAATTGTGACAAATGTGAAGCGCCTTTTACAGCAAACGGAAGCAGTG
ATGACGTTTCCGGAATCGGAATTTTTGCTGGCGCTCGGAAGGCTTGAGGAGCGTTTATCCGTTCAATATGCTCCCACGCA
AAAAGAAGCGATTCGACAAGCGCTTTCTTCCCCGCTGTTTATTTTGACCGGAGGCCCCGGCACAGGAAAAACGACAGTCA
TTAAAGGGATTGTGGAAATTTTCGCTGATTTGCACGGTTTTTCCCTCGATCCGAAAGATTACACGAAAGATGATCCATTT
CCGATTTTGCTCGCCGCGCCGACGGGAAGGGCGGCAAAAAGAATGAGCGAAGCGACGGGGTTGCCTGCGGTGACGATTCA
CCGTTTGCTTGGATGGAATGGGGCGGAAGGTTTTACCCATGACGAGGACGAGCCGATTAGCGGCAAACTTTTAATCGTTG
ATGAAATGTCGATGGTCGATACGTGGCTGGCCAATCAGCTGTTTAAGTCGATTCCGGACGGCATGCAAGTGATCCTTGTC
GGGGATGAAGATCAGCTGCCATCTGTCGGACCGGGACAAGTGTTAAAGGATTTATTGCAAGCGGGTGTCATCCCGACCGT
TCGGCTAACCGAAGTGTACCGGCAAGCGGAGGGCTCATCGATTATCGAATTGGCGCACCAAATGAAAAACGGGGGCCTTC
CTCCGGACTTAACTGCTCCAAAGGCAGACCGTTCATTCATTCGCTGCCAGACTTCACAAGTTGCTGAAGTTGTCCGGCAA
ATTGCCGACAATGCGCGCAGAAAAGGCTTCGCAGTGAAAGACATTCAAGTGCTTGCCCCGATGTATCGCGGCCCTGCCGG
GATCGACCGCCTCAATCAAGTGCTGCAAGATTTGTTTAATCCGAAATCTGAGAAAAAGCGGGAACTTTCGGTTGGCGATG
TCATATATCGGGTTGGTGATAAGGTGCTGCAGCTTGTCAACCAACCTGATGACAATGTGTTTAATGGGGACATTGGGGAA
ATTGTCGCGATTTTTTACGCGAAAGAAAATACGGAGAAGCAAGATTTAGTTGTCGTTTCTTTTGACGGCATCGAGGTGAC
ATATTCGCGGCAAGATTTGTCGCAAATTACGCATGCATATTGCTGTTCCATTCATAAATCGCAAGGAAGCGAATTTCCAA
TTGTCATTTTGCCGGTTGTGAAAAGCTATTATCGCATGTTAAAGCGGAATTTATTATATACGGCCGTGACAAGAAGCAAA
CAATTTTTAATTATATGCGGCGAAGAAGAGGCGTTTAAATTAGGGGTTGCCCGCAGTGATGATAGCTCCCGGCAAACAAC
GCTGACGGAAAAATTGCAAAAAATTCTTGTCCCTGCTGTTGAAGGGGAGCTGCCGATGGAAGACGCGAACATCGGAATGG
AAAACGTTTCACCGTATGACTTTATGGATGAGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

AAA domain (AAA_30)

(343-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.43

100

0.642

Multiple sequence alignment