Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GEOTH_RS05315 Genome accession   NC_015660
Coordinates   1035909..1038266 (+) Length   785 a.a.
NCBI ID   WP_013876541.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius C56-YS93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1030909..1043266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOTH_RS05295 (Geoth_1054) - 1030926..1031300 (-) 375 WP_013876538.1 TIGR04086 family membrane protein -
  GEOTH_RS05300 (Geoth_1055) spoVB 1031370..1032932 (-) 1563 WP_013876539.1 stage V sporulation protein B -
  GEOTH_RS05305 (Geoth_1056) - 1033050..1033346 (+) 297 WP_013876540.1 post-transcriptional regulator -
  GEOTH_RS05310 (Geoth_1057) secDF 1033528..1035780 (+) 2253 WP_003248932.1 protein translocase subunit SecDF -
  GEOTH_RS05315 (Geoth_1058) recJ 1035909..1038266 (+) 2358 WP_013876541.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GEOTH_RS05320 (Geoth_1059) - 1038266..1038778 (+) 513 WP_003248934.1 adenine phosphoribosyltransferase -
  GEOTH_RS05325 (Geoth_1060) - 1038967..1041162 (+) 2196 WP_003248936.1 RelA/SpoT family protein -
  GEOTH_RS05330 (Geoth_1061) dtd 1041177..1041635 (+) 459 WP_003248937.1 D-aminoacyl-tRNA deacylase -
  GEOTH_RS05335 (Geoth_1063) - 1041733..1041918 (+) 186 WP_061577858.1 hypothetical protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88016.47 Da        Isoelectric Point: 5.4135

>NTDB_id=41260 GEOTH_RS05315 WP_013876541.1 1035909..1038266(+) (recJ) [Parageobacillus thermoglucosidasius C56-YS93]
MLIAKTRWDVKRPDENIVKHLVEQLRIDPLIATLLVHRGVRTAEEANVFLYPLKQPFHDPFLLDGMERAVVRIQRAIQDG
EHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGYGPNEKAFRWAKDQGFSLIITVDNGIAAVKEVALANEL
GMDVIITDHHEVGPTLPEAYEIIHPKKPGSTYPFRELAGVGVAFKVAHALLGEVPRYLLDVAAIGTIADLVSLTGENRVL
VAQGLEQLRKTKRIGLRALCTQCGIDAEKIDEQTVGFIIAPRMNAAGRLGEADPAVRLLMTEDEEEAKRLAKEMDDLNRE
RQQLVAEIAEEAAQIIQEQFPPSENKVLVVAKEGWNPGVIGIVASRLVEQFYRPTIVLSIDAEKGIAKGSARSIHGFDMF
SSLSTCRDILLHFGGHPMAAGMTLSLEDVGELRRRLNALADDMLTDDDFTPITSIDAVCSVSDLTMAVAEQLEKFAPFGV
GNAKPLFLMENVSVETMRRVGADQSHLKAVFAQNGAAIDSVGFGFGYLRDEIAPDAKVSVVGELVINEWNHLRKPQLMIY
DMAVHECQLFDIRGMRDVRPLIAALPPDKRMLIMFREDTADALGIGAYKEEIYYAASAEEASRLCLDGRYVVLLDMPPSL
KMMKMLLRSSLPARIYALFYQRETHFFRTLPTREHFKWFYAFLRKRGMFNLAKHGGELARARGWTEETVWFMAKVFLELE
FITQRDGIVSLVPQPAKRDLSESPTYRLKQAQYELESLFLYSTYEQLKRCLFEMKGLHTYEEANA

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=41260 GEOTH_RS05315 WP_013876541.1 1035909..1038266(+) (recJ) [Parageobacillus thermoglucosidasius C56-YS93]
ATGTTAATCGCAAAAACACGTTGGGATGTAAAACGGCCCGACGAAAATATCGTAAAGCATTTAGTGGAACAATTGCGGAT
CGATCCGCTTATTGCCACCCTTCTTGTCCATCGCGGAGTCCGCACGGCAGAAGAGGCAAACGTGTTTTTATATCCGCTGA
AACAACCGTTTCATGATCCGTTTTTGCTAGATGGGATGGAGCGGGCGGTCGTGCGGATTCAGCGGGCGATACAGGATGGG
GAGCATATTTTAGTATATGGCGATTATGATGCGGACGGCGTAAGCAGCACGACGGTAATGGTCAGTGCGCTGAAGGAAGC
TGGCGCCATTGTGGATTTTTACATTCCCAACCGCTTTACCGAAGGATATGGCCCGAATGAAAAAGCGTTTCGCTGGGCAA
AGGATCAGGGATTTTCCTTGATTATTACGGTCGATAATGGCATTGCCGCGGTGAAGGAAGTGGCGCTTGCCAACGAGCTC
GGGATGGATGTCATTATTACCGACCATCACGAAGTGGGGCCGACGCTGCCGGAAGCGTATGAAATCATTCATCCGAAAAA
GCCTGGAAGTACATATCCGTTTCGAGAATTAGCCGGGGTTGGAGTGGCGTTTAAAGTTGCGCATGCGCTGCTCGGAGAGG
TGCCGCGCTATTTATTGGATGTCGCCGCAATCGGAACGATCGCCGATCTCGTTTCCCTTACCGGCGAAAATCGCGTATTG
GTGGCGCAAGGGCTTGAGCAGTTGCGAAAGACAAAACGTATAGGATTGCGCGCATTGTGTACACAATGTGGGATAGACGC
AGAAAAAATTGACGAGCAAACGGTGGGATTTATCATTGCGCCGCGGATGAATGCGGCCGGGCGATTGGGGGAAGCCGATC
CCGCTGTAAGATTGCTGATGACGGAGGATGAAGAAGAAGCAAAAAGGCTTGCGAAAGAAATGGATGATTTAAACCGGGAA
CGGCAGCAGCTTGTCGCGGAAATCGCGGAAGAAGCGGCACAAATCATACAGGAACAATTTCCGCCATCCGAGAATAAAGT
GCTGGTGGTGGCCAAAGAAGGATGGAATCCCGGAGTCATTGGTATTGTTGCATCCCGGCTGGTCGAACAGTTTTATCGCC
CGACGATCGTGCTAAGCATTGATGCGGAAAAAGGAATTGCGAAAGGTTCGGCGCGAAGCATTCACGGGTTTGATATGTTT
TCAAGCTTGTCGACGTGCCGCGATATTTTGCTGCATTTTGGCGGCCATCCGATGGCAGCGGGAATGACGCTGTCTCTTGA
AGATGTTGGCGAATTGCGCCGGCGTCTTAACGCGCTTGCCGACGATATGCTGACAGACGATGATTTTACGCCAATAACAT
CGATTGACGCGGTTTGTTCCGTATCTGATTTAACCATGGCGGTGGCGGAGCAGCTGGAAAAATTCGCTCCATTTGGTGTC
GGTAATGCCAAACCTCTTTTTTTAATGGAAAATGTGTCAGTGGAAACGATGCGCCGCGTCGGTGCCGATCAATCGCATTT
AAAGGCCGTTTTTGCGCAAAATGGCGCTGCAATTGATAGCGTTGGCTTCGGCTTCGGATATTTGCGCGATGAAATCGCTC
CGGATGCGAAAGTGTCGGTTGTCGGCGAGCTTGTTATTAATGAGTGGAATCATCTTCGCAAGCCGCAGCTGATGATTTAT
GATATGGCGGTGCATGAATGCCAGCTGTTTGATATTCGCGGTATGCGCGATGTAAGGCCGCTGATTGCAGCGCTTCCGCC
AGATAAGCGGATGCTCATTATGTTTCGCGAAGATACGGCGGATGCGTTAGGAATCGGAGCATATAAAGAAGAGATTTATT
ATGCCGCCTCAGCGGAAGAAGCATCGCGGCTTTGTTTAGATGGCCGCTATGTGGTGCTGTTGGATATGCCTCCGTCTTTG
AAAATGATGAAAATGTTATTACGTTCTAGTTTACCTGCACGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
CCGCACGTTGCCGACGCGTGAACATTTTAAGTGGTTTTACGCGTTTTTGCGGAAGCGGGGCATGTTTAATTTGGCGAAAC
ACGGCGGAGAGTTGGCACGTGCGCGTGGCTGGACGGAAGAAACCGTCTGGTTTATGGCGAAAGTGTTTCTTGAACTGGAA
TTTATAACGCAACGGGATGGCATCGTATCGCTTGTTCCTCAGCCGGCTAAGCGAGATTTAAGCGAATCGCCGACTTATCG
CTTGAAACAAGCTCAGTATGAGCTGGAAAGTCTTTTTTTATATTCCACATATGAACAATTAAAGCGGTGTCTTTTTGAAA
TGAAAGGTTTGCACACATATGAGGAGGCAAATGCATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(305-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.393

98.599

0.536

Multiple sequence alignment