Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H5023_RS28145 Genome accession   NZ_CP060005
Coordinates   5974310..5975035 (+) Length   241 a.a.
NCBI ID   WP_012613519.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WK190     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5969310..5980035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5023_RS28115 (H5023_28010) - 5969430..5970308 (-) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -
  H5023_RS28120 (H5023_28015) - 5970310..5971686 (-) 1377 WP_012613520.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  H5023_RS28125 (H5023_28020) - 5971697..5971945 (-) 249 WP_016561527.1 acetyl-CoA carboxylase -
  H5023_RS28130 (H5023_28025) - 5972022..5972780 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  H5023_RS28135 (H5023_28030) - 5972898..5973824 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  H5023_RS28140 (H5023_28035) - 5973878..5974171 (+) 294 WP_003084806.1 hypothetical protein -
  H5023_RS28145 (H5023_28040) comF 5974310..5975035 (+) 726 WP_012613519.1 ComF family protein Machinery gene
  H5023_RS28150 (H5023_28045) - 5975077..5975397 (+) 321 WP_033981690.1 YfiM family lipoprotein -
  H5023_RS28155 (H5023_28050) - 5975465..5976223 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  H5023_RS28160 (H5023_28055) - 5976285..5977259 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  H5023_RS28165 (H5023_28060) rarD 5977462..5978358 (+) 897 WP_003103301.1 EamA family transporter RarD -
  H5023_RS28170 (H5023_28065) - 5979048..5979563 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27080.53 Da        Isoelectric Point: 10.8076

>NTDB_id=412453 H5023_RS28145 WP_012613519.1 5974310..5975035(+) (comF) [Pseudomonas aeruginosa strain WK190]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=412453 H5023_RS28145 WP_012613519.1 5974310..5975035(+) (comF) [Pseudomonas aeruginosa strain WK190]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386

Multiple sequence alignment