Detailed information NTG0412453

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GTF74_RS01110
• Genome accession: NZ_CP047303
• Coordinates: 237344..238351 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O1 biovar El Tor strain E7946
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 232344..243351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF74_RS01090 (GTF74_01090)	metJ	232348..232665 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
GTF74_RS01095 (GTF74_01095)	-	232776..234053 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
GTF74_RS01100 (GTF74_01100)	rpmE	234361..234579 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
GTF74_RS01105 (GTF74_01105)	priA	234834..237038 (+)	2205	WP_001247858.1	primosomal protein N'	-
GTF74_RS01110 (GTF74_01110)	cytR	237344..238351 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
GTF74_RS01115 (GTF74_01115)	-	238523..239074 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
GTF74_RS01120 (GTF74_01120)	hslV	239211..239768 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
GTF74_RS01125 (GTF74_01125)	hslU	239834..241165 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
GTF74_RS01130 (GTF74_01130)	-	241269..242186 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GTF74_RS01135 (GTF74_01135)	rraA	242261..242776 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=412453 GTF74_RS01110 WP_000224452.1 237344..238351(+) (cytR) [Vibrio cholerae O1 biovar El Tor strain E7946]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=412453 GTF74_RS01110 WP_000224452.1 237344..238351(+) (cytR) [Vibrio cholerae O1 biovar El Tor strain E7946]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904