Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GKS41_RS10585 Genome accession   NZ_CP047268
Coordinates   2105071..2105850 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain DH8043     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2100071..2110850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS10565 trmFO 2100753..2102060 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GKS41_RS10570 xerC 2102135..2103052 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  GKS41_RS10575 hslV 2103068..2103613 (+) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  GKS41_RS10580 hslU 2103630..2105033 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  GKS41_RS10585 codY 2105071..2105850 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GKS41_RS10590 flgB 2106204..2106593 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  GKS41_RS10595 flgC 2106593..2107045 (+) 453 WP_159354159.1 flagellar basal body rod protein FlgC -
  GKS41_RS10600 fliE 2107056..2107376 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  GKS41_RS10605 fliF 2107419..2109029 (+) 1611 WP_159354160.1 flagellar basal-body MS-ring/collar protein FliF -
  GKS41_RS10610 fliG 2109042..2110058 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  GKS41_RS10615 fliH 2110051..2110806 (+) 756 WP_159354161.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=412009 GKS41_RS10585 WP_003154263.1 2105071..2105850(+) (codY) [Bacillus velezensis strain DH8043]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=412009 GKS41_RS10585 WP_003154263.1 2105071..2105850(+) (codY) [Bacillus velezensis strain DH8043]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment