Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BCO26_RS09240 Genome accession   NC_015634
Coordinates   1832914..1835337 (-) Length   807 a.a.
NCBI ID   WP_041819176.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 2-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1827914..1840337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS09220 (BCO26_1804) - 1830442..1831533 (-) 1092 WP_013859756.1 AI-2E family transporter -
  BCO26_RS15630 (BCO26_1805) - 1831773..1831913 (-) 141 WP_235601548.1 DUF3918 family protein -
  BCO26_RS09230 (BCO26_1806) - 1831922..1832134 (-) 213 WP_013859758.1 hypothetical protein -
  BCO26_RS09235 (BCO26_1807) - 1832294..1832734 (+) 441 WP_013859759.1 YndM family protein -
  BCO26_RS16190 - 1832756..1832908 (+) 153 WP_155116794.1 hypothetical protein -
  BCO26_RS09240 (BCO26_1808) recD2 1832914..1835337 (-) 2424 WP_041819176.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BCO26_RS09245 (BCO26_1809) - 1835348..1836016 (-) 669 WP_013859761.1 tetratricopeptide repeat protein -
  BCO26_RS09250 (BCO26_1810) mnmA 1836391..1837506 (-) 1116 WP_013859762.1 tRNA 2-thiouridine(34) synthase MnmA -
  BCO26_RS09255 (BCO26_1811) - 1837522..1838667 (-) 1146 WP_041819178.1 cysteine desulfurase family protein -
  BCO26_RS09260 (BCO26_1812) cymR 1838688..1839107 (-) 420 WP_013859764.1 cysteine metabolism transcriptional regulator CymR -
  BCO26_RS09265 (BCO26_1813) - 1839490..1840233 (-) 744 WP_013859765.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 90706.83 Da        Isoelectric Point: 4.8244

>NTDB_id=41192 BCO26_RS09240 WP_041819176.1 1832914..1835337(-) (recD2) [Heyndrickxia coagulans 2-6]
MEKQHAMDLFQDQENFIKGKHLATIFHNEQNLYSVIRVRVEETNTGMEEKETVITGYFPRIHEQETYTFFGKMQEHPKFG
PQFQANRFQKDIPNTKQGVVEYLSSDLFNGIGKKTAERIVGVLGENAISKILENPAALDEVPKLAPEKAQLIHDTLVEHQ
GLERVMIGLAQYGFGPQIAMRIYQVYEDEALEMIAQNPYRLVDDIKGIGFGRADELGRQLGISGTHPHRIQAGCCYMLEM
ESMQHGHVYVLKEELAQDVKALLEEYQNVEIPVGLIENELVKLQEESKVIMEEDKVYLPSLYFSEKGIVSNIERIMSQTE
YAEQFPESEFLLALGSLEERLGVEYAPSQKEAIQKALMSPMMILTGGPGTGKTTVIKGIVELYGELHGVSLDPQTYKKDE
VFPIVLAAPTGRAAKRMAESTGLPAMTIHRLLGMTGMEDLDDSEERQVEGKLVIIDEMSMVDTWLANQLLKALPDEIQVI
MVGDEDQLPSVGPGQVLKDLLKSGAIPVVRLTDIYRQKDGSSIIELAHHVKNGRIPENIFQMQADRSFIRCSSGQVAEAV
EKVVKSAKRKGYTAKDIQVLAPMYRGPAGIDRLNSLLQNIFNPNENGARKELKHGDAVYRIGDKVLQLVNQPEHGVYNGD
IGEIVSLFTAKENTEKQDMLIVSFDGIEVTYTKPDFNQITLAYCCSIHKSQGSEFPVVILPVVRSYYRMLRRNLLYTAIT
RSKKILILLGEEPAFRMGVEREDDQKRKTTLCEKLAEALKTEQIEAGTETLLSLTEENWDQVDPMIGMEGITPYTFAEEK
QTAPQAD

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=41192 BCO26_RS09240 WP_041819176.1 1832914..1835337(-) (recD2) [Heyndrickxia coagulans 2-6]
TTGGAAAAACAGCATGCGATGGATTTATTCCAGGACCAGGAAAATTTTATAAAAGGAAAGCATCTCGCGACCATTTTCCA
TAACGAGCAAAATTTGTATTCCGTCATCCGTGTGCGGGTTGAAGAGACCAATACCGGGATGGAAGAAAAGGAAACGGTCA
TTACCGGCTATTTTCCGCGCATCCATGAGCAGGAAACGTACACCTTTTTTGGAAAAATGCAGGAACACCCGAAATTCGGC
CCCCAATTCCAGGCAAACCGCTTTCAGAAGGACATTCCCAATACAAAGCAGGGTGTTGTTGAGTATCTTTCCAGTGATTT
ATTCAACGGCATCGGTAAAAAAACGGCGGAGCGGATCGTTGGCGTGCTCGGTGAAAATGCGATCAGCAAAATATTGGAAA
ATCCCGCCGCCCTTGACGAAGTACCAAAACTGGCGCCGGAAAAAGCACAGCTGATCCATGATACGTTGGTTGAACACCAG
GGGCTTGAACGTGTCATGATCGGGCTTGCGCAATACGGTTTCGGGCCGCAGATTGCGATGCGCATTTACCAGGTTTACGA
GGATGAGGCGCTCGAAATGATCGCACAAAATCCGTACCGGCTCGTCGATGATATCAAAGGCATCGGTTTCGGGCGGGCCG
ATGAACTCGGCCGGCAGCTCGGCATCAGCGGGACGCATCCGCACCGCATCCAGGCCGGCTGCTGTTACATGCTGGAAATG
GAAAGCATGCAGCACGGCCATGTGTACGTCCTGAAAGAAGAACTTGCGCAGGATGTCAAAGCCCTTTTGGAAGAGTACCA
GAATGTTGAAATCCCGGTCGGCCTGATTGAAAATGAGCTGGTAAAACTGCAGGAAGAGAGCAAAGTGATCATGGAAGAAG
ACAAAGTCTATCTTCCGTCCCTCTATTTTTCGGAAAAAGGAATCGTTTCCAATATTGAGCGGATAATGTCGCAAACCGAG
TATGCGGAACAGTTCCCGGAGTCGGAATTCCTGCTTGCCCTGGGCAGCCTTGAAGAACGGCTCGGCGTCGAGTATGCCCC
GTCGCAAAAGGAAGCTATCCAAAAAGCGCTGATGAGTCCGATGATGATTTTAACGGGCGGGCCCGGCACAGGGAAAACAA
CGGTCATTAAAGGGATTGTGGAACTGTACGGCGAGTTGCACGGCGTCTCGCTTGACCCGCAAACCTATAAAAAAGATGAG
GTATTTCCGATTGTTCTCGCGGCGCCGACAGGGAGGGCCGCGAAAAGAATGGCGGAATCAACCGGTCTGCCGGCAATGAC
AATCCACCGCCTGCTCGGCATGACCGGCATGGAGGACCTAGACGATTCAGAGGAACGGCAGGTAGAAGGCAAGCTCGTCA
TTATTGATGAAATGTCGATGGTCGATACATGGCTTGCAAACCAGCTGTTAAAGGCGCTGCCGGATGAAATCCAGGTCATT
ATGGTCGGGGATGAAGACCAGCTGCCGTCCGTCGGTCCGGGCCAGGTGCTGAAAGATTTATTGAAATCGGGTGCCATCCC
GGTTGTCAGGCTGACGGACATATACAGGCAGAAAGATGGTTCTTCGATTATTGAACTGGCCCACCATGTCAAAAATGGGC
GTATTCCGGAAAATATTTTTCAAATGCAGGCGGACCGTTCGTTTATCCGCTGTTCTTCCGGGCAGGTGGCAGAAGCGGTG
GAAAAAGTGGTGAAAAGCGCGAAACGGAAAGGCTATACGGCAAAAGACATCCAGGTGCTGGCGCCGATGTACAGGGGGCC
GGCCGGCATTGACCGCCTGAACAGCCTTTTGCAAAATATTTTTAATCCGAATGAGAACGGCGCCCGCAAAGAGCTGAAGC
ACGGGGACGCGGTTTACCGGATCGGCGATAAGGTGCTGCAGCTTGTCAACCAGCCGGAACACGGAGTGTATAACGGCGAT
ATCGGCGAGATTGTCTCCCTTTTTACCGCAAAAGAAAATACGGAAAAACAAGATATGCTCATCGTTTCTTTTGACGGGAT
TGAAGTGACGTATACGAAGCCTGATTTCAACCAGATTACGCTTGCGTATTGCTGTTCGATCCATAAATCGCAAGGAAGCG
AGTTTCCGGTCGTGATCTTGCCGGTTGTCCGCAGCTATTACCGGATGCTGCGCCGAAACTTGCTGTATACTGCGATCACA
AGAAGCAAAAAAATTTTAATTCTGCTTGGCGAAGAACCGGCTTTCCGGATGGGTGTGGAAAGGGAAGATGACCAAAAACG
GAAGACGACACTGTGTGAAAAACTGGCTGAAGCATTAAAAACGGAACAAATAGAGGCAGGGACGGAGACACTCCTGTCCC
TGACAGAAGAAAATTGGGACCAGGTCGACCCGATGATTGGCATGGAGGGCATTACCCCGTACACTTTCGCGGAAGAAAAG
CAAACGGCTCCCCAAGCGGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.424

99.257

0.6

Multiple sequence alignment