Detailed information NTG0411829

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: GSQ19_RS24345
• Genome accession: NZ_CP047242
• Coordinates: 5906603..5907712 (+)
• Length: 369 a.a.
• NCBI ID: WP_011320390.1
• Uniprot ID: -
• Organism: Trichormus variabilis 0441
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5901603..5912712

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSQ19_RS24325 (GSQ19_24325)	-	5902107..5902232 (+)	126	WP_010995199.1	photosystem II protein Y	-
GSQ19_RS24330 (GSQ19_24330)	-	5902364..5903614 (+)	1251	WP_011320387.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
GSQ19_RS24335 (GSQ19_24335)	-	5904017..5904805 (+)	789	WP_011320388.1	FkbM family methyltransferase	-
GSQ19_RS24340 (GSQ19_24340)	-	5905072..5906370 (-)	1299	WP_011320389.1	sugar ABC transporter substrate-binding protein	-
GSQ19_RS24345 (GSQ19_24345)	pilM	5906603..5907712 (+)	1110	WP_011320390.1	type IV pilus biogenesis protein PilM	Machinery gene
GSQ19_RS24350 (GSQ19_24350)	-	5907815..5908582 (+)	768	WP_011320391.1	PilN domain-containing protein	-
GSQ19_RS24355 (GSQ19_24355)	-	5908579..5909340 (+)	762	WP_011320392.1	pilus assembly protein PilO	-
GSQ19_RS24360 (GSQ19_24360)	-	5909458..5911893 (+)	2436	WP_011320393.1	type IV pilus secretin family protein	-
GSQ19_RS24365 (GSQ19_24365)	-	5912027..5912353 (-)	327	WP_011320394.1	XRE family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 40679.59 Da
• Isoelectric Point: 4.5055

>NTDB_id=411829 GSQ19_RS24345 WP_011320390.1 5906603..5907712(+) (pilM) [Trichormus variabilis 0441]
MVKSFSSLFGKSHRGVGVEIAPERVNVVQIRKQRQGLKLESLTSVPVPEGIVTDGQITDPPAMAQLIQQALAESKIKKVS
RVATGVPGRDSIVRIIPVPSELDDKELRDMVLNHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVRVLLVATRKEVTDT
YISTFEQAGLQIGVLEINSFALIRTIRDQLRQFGPEEATVLVDIEFDSTEIAIIINGVPQFSRTVPIGTYQMQMAFARAM
SLPTSRDMEMLQGLVIPVNSVESDKTGMTETDPGIAGVLRILGELTDELRRSIDFYLNQSENVEIAQILLGGPGGGLEQL
HEFFTQRLSIPTSQIDPIGSLSLQVDEEKYPSTQRSGLGIVLGLGMREV

Nucleotide

• Length: 1110 bp

>NTDB_id=411829 GSQ19_RS24345 WP_011320390.1 5906603..5907712(+) (pilM) [Trichormus variabilis 0441]
GTGGTGAAAAGTTTCAGTAGTCTGTTTGGCAAATCTCATAGAGGGGTGGGTGTAGAAATTGCACCAGAACGGGTGAATGT
AGTTCAAATACGCAAGCAGCGCCAAGGCTTGAAACTTGAATCTTTAACATCAGTTCCAGTTCCGGAGGGGATTGTCACTG
ATGGTCAAATCACCGATCCTCCAGCGATGGCGCAATTAATTCAGCAGGCGCTGGCTGAAAGCAAAATCAAAAAAGTATCT
CGTGTGGCTACTGGTGTACCCGGACGAGATTCCATTGTCCGCATCATACCCGTACCATCAGAGTTGGATGACAAAGAATT
ACGGGATATGGTGTTAAATCACGAAGCCGGGTTGTATTTACCCTATCCTCGTGAAGAAGCTGATGTAGATTATCAGAAAC
TTGGGTACTTTGTGGATGAGGATGGCATTGAAAAAGTACGGGTGCTGTTAGTTGCTACCCGCAAGGAGGTGACAGATACA
TATATTAGTACTTTTGAGCAGGCAGGCTTACAAATTGGTGTTTTAGAAATTAACAGTTTTGCACTAATTCGGACAATTCG
TGATCAACTGCGGCAATTTGGGCCAGAAGAAGCAACGGTACTAGTTGATATAGAGTTCGACAGTACAGAAATTGCGATCA
TCATTAATGGCGTACCACAATTTTCCCGTACTGTCCCCATTGGCACTTATCAAATGCAAATGGCATTTGCTAGAGCTATG
AGTTTGCCCACTTCCAGAGATATGGAAATGTTACAGGGATTGGTGATTCCTGTAAATTCCGTAGAGAGCGATAAAACGGG
AATGACGGAAACCGACCCCGGTATTGCTGGCGTATTGCGAATCCTGGGAGAACTAACAGATGAGCTACGCCGTTCTATTG
ATTTTTACTTAAATCAGAGTGAAAACGTAGAAATAGCCCAGATTTTATTGGGTGGGCCTGGTGGCGGACTAGAACAACTT
CATGAGTTTTTTACTCAGCGTTTAAGTATTCCTACCAGTCAAATCGATCCTATAGGGTCTTTGTCCTTGCAAGTTGATGA
AGAAAAATATCCCTCTACACAACGTTCTGGCTTAGGAATAGTCCTTGGTTTAGGAATGAGGGAGGTATGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (284-368)

• Type IV pilus assembly protein PilM; (PilM_2) (17-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Synechocystis sp. PCC 6803	63.587	99.729	0.634