Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   GR342_RS06785 Genome accession   NZ_CP047216
Coordinates   1325495..1326010 (-) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain SH89     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320495..1331010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS06770 (GR342_06710) - 1320599..1322413 (-) 1815 WP_283652056.1 motility associated factor glycosyltransferase family protein -
  GR342_RS06775 (GR342_06715) - 1322410..1324233 (-) 1824 WP_052773884.1 motility associated factor glycosyltransferase family protein -
  GR342_RS06780 (GR342_06720) - 1324244..1325495 (-) 1252 Protein_1310 DUF2920 family protein -
  GR342_RS06785 (GR342_06725) ctsG 1325495..1326010 (-) 516 WP_002780549.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GR342_RS06790 (GR342_06730) tsaD 1326014..1327021 (-) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  GR342_RS06795 (GR342_06735) - 1327018..1328412 (-) 1395 WP_250414988.1 M99 family carboxypeptidase catalytic domain-containing protein -
  GR342_RS06800 (GR342_06740) dxr 1328409..1329485 (-) 1077 WP_002845859.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  GR342_RS06805 (GR342_06745) - 1329482..1330207 (-) 726 WP_002806265.1 phosphatidate cytidylyltransferase -
  GR342_RS06810 (GR342_06750) - 1330216..1330554 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=411573 GR342_RS06785 WP_002780549.1 1325495..1326010(-) (ctsG) [Campylobacter coli strain SH89]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=411573 GR342_RS06785 WP_002780549.1 1325495..1326010(-) (ctsG) [Campylobacter coli strain SH89]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918

Multiple sequence alignment