Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   GR341_RS07160 Genome accession   NZ_CP047214
Coordinates   1374209..1374724 (-) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain QL_1_15     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1369209..1379724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR341_RS07145 (GR341_07130) - 1369311..1371128 (-) 1818 WP_170879191.1 motility associated factor glycosyltransferase family protein -
  GR341_RS07150 (GR341_07135) - 1371125..1372948 (-) 1824 WP_162284648.1 motility associated factor glycosyltransferase family protein -
  GR341_RS07155 (GR341_07140) - 1372959..1374209 (-) 1251 WP_162284647.1 DUF2920 family protein -
  GR341_RS07160 (GR341_07145) ctsG 1374209..1374724 (-) 516 WP_002780549.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GR341_RS07165 (GR341_07150) tsaD 1374728..1375735 (-) 1008 WP_002838047.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  GR341_RS07170 (GR341_07155) - 1375732..1377126 (-) 1395 WP_002838049.1 M99 family carboxypeptidase catalytic domain-containing protein -
  GR341_RS07175 (GR341_07160) dxr 1377123..1378199 (-) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  GR341_RS07180 (GR341_07165) - 1378196..1378921 (-) 726 WP_057038164.1 phosphatidate cytidylyltransferase -
  GR341_RS07185 (GR341_07170) - 1378930..1379268 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=411548 GR341_RS07160 WP_002780549.1 1374209..1374724(-) (ctsG) [Campylobacter coli strain QL_1_15]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=411548 GR341_RS07160 WP_002780549.1 1374209..1374724(-) (ctsG) [Campylobacter coli strain QL_1_15]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918

Multiple sequence alignment