Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   GR339_RS02285 Genome accession   NZ_CP047212
Coordinates   452298..452813 (+) Length   171 a.a.
NCBI ID   WP_223416970.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_79     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447298..457813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS02260 (GR339_02240) - 447755..448093 (+) 339 WP_002806264.1 hypothetical protein -
  GR339_RS02265 (GR339_02245) - 448102..448827 (+) 726 WP_250406488.1 phosphatidate cytidylyltransferase -
  GR339_RS02270 (GR339_02250) dxr 448824..449894 (+) 1071 WP_157142294.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  GR339_RS02275 (GR339_02255) - 449896..451290 (+) 1395 WP_250406486.1 M99 family carboxypeptidase catalytic domain-containing protein -
  GR339_RS02280 (GR339_02260) tsaD 451287..452294 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  GR339_RS02285 (GR339_02265) ctsG 452298..452813 (+) 516 WP_223416970.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GR339_RS02290 (GR339_02270) - 452813..454062 (+) 1250 Protein_444 DUF2920 family protein -
  GR339_RS02295 (GR339_02275) - 454073..455896 (+) 1824 WP_283651967.1 motility associated factor glycosyltransferase family protein -
  GR339_RS02300 (GR339_02280) - 455893..457710 (+) 1818 WP_283651968.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18836.66 Da        Isoelectric Point: 5.7890

>NTDB_id=411521 GR339_RS02285 WP_223416970.1 452298..452813(+) (ctsG) [Campylobacter coli strain JZ_1_79]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=411521 GR339_RS02285 WP_223416970.1 452298..452813(+) (ctsG) [Campylobacter coli strain JZ_1_79]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.228

100

0.912

Multiple sequence alignment