Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   GR340_RS07575 Genome accession   NZ_CP047197
Coordinates   1432448..1432963 (-) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain JZ_1_95     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427448..1437963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS07560 (GR340_07435) - 1427552..1429369 (-) 1818 WP_250426861.1 motility associated factor glycosyltransferase family protein -
  GR340_RS07565 (GR340_07440) - 1429366..1431195 (-) 1830 WP_250426862.1 motility associated factor glycosyltransferase family protein -
  GR340_RS07570 (GR340_07445) - 1431207..1432448 (-) 1242 WP_002780551.1 DUF2920 family protein -
  GR340_RS07575 (GR340_07450) ctsG 1432448..1432963 (-) 516 WP_002780549.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GR340_RS07580 (GR340_07455) tsaD 1432967..1433974 (-) 1008 WP_072234827.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  GR340_RS07585 (GR340_07460) - 1433971..1435365 (-) 1395 WP_277737361.1 M99 family carboxypeptidase catalytic domain-containing protein -
  GR340_RS07590 (GR340_07465) dxr 1435362..1436438 (-) 1077 WP_002806266.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  GR340_RS07595 (GR340_07470) - 1436435..1437160 (-) 726 WP_002812238.1 phosphatidate cytidylyltransferase -
  GR340_RS07600 (GR340_07475) - 1437169..1437507 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=411461 GR340_RS07575 WP_002780549.1 1432448..1432963(-) (ctsG) [Campylobacter coli strain JZ_1_95]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=411461 GR340_RS07575 WP_002780549.1 1432448..1432963(-) (ctsG) [Campylobacter coli strain JZ_1_95]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918

Multiple sequence alignment