Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VAA_RS00145 Genome accession   NC_015633
Coordinates   36002..36703 (+) Length   233 a.a.
NCBI ID   WP_013855424.1    Uniprot ID   A0AAW4AGA2
Organism   Vibrio anguillarum 775     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 31002..41703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA_RS00125 (VAA_00634) greB 31046..31528 (-) 483 WP_010319306.1 transcription elongation factor GreB -
  VAA_RS00130 (VAA_00635) - 31872..34202 (+) 2331 WP_013855420.1 Tex family protein -
  VAA_RS00135 (VAA_00636) - 34352..34822 (-) 471 WP_026027513.1 hypothetical protein -
  VAA_RS00140 (VAA_00638) bioH 35090..35855 (-) 766 Protein_28 pimeloyl-ACP methyl ester esterase BioH -
  VAA_RS00145 (VAA_00639) comF 36002..36703 (+) 702 WP_013855424.1 amidophosphoribosyltransferase Machinery gene
  VAA_RS00150 (VAA_00640) nfuA 36804..37391 (+) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  VAA_RS00155 (VAA_00641) nudE 37546..38091 (+) 546 WP_013855426.1 ADP compounds hydrolase NudE -
  VAA_RS00160 (VAA_00642) cysQ 38116..38943 (+) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VAA_RS00165 (VAA_00643) - 39026..39784 (-) 759 WP_013855428.1 type II secretion system protein N -
  VAA_RS00170 (VAA_00644) - 39781..40278 (-) 498 WP_013855429.1 type II secretion system protein M -
  VAA_RS00175 (VAA_00645) gspL 40289..41500 (-) 1212 WP_013855430.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26646.04 Da        Isoelectric Point: 9.4459

>NTDB_id=41126 VAA_RS00145 WP_013855424.1 36002..36703(+) (comF) [Vibrio anguillarum 775]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFSPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHLPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=41126 VAA_RS00145 WP_013855424.1 36002..36703(+) (comF) [Vibrio anguillarum 775]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTTCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGCGGGCAATGTTTAGCAAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAC
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACCAGCGTTCCGTTGCACTGGCAACGGCGCTTAAAACGCGGATTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACACCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGGCACCTTCC
CACGCACAAGCACATTGCACTTGTTGATGATGTAGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment