Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GRQ40_RS13655 Genome accession   NZ_CP047158
Coordinates   2827064..2829421 (-) Length   785 a.a.
NCBI ID   WP_159720894.1    Uniprot ID   -
Organism   Anoxybacillus sp. PDR2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2822064..2834421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRQ40_RS13640 (GRQ40_13640) dtd 2823738..2824190 (-) 453 WP_044744648.1 D-aminoacyl-tRNA deacylase -
  GRQ40_RS13645 (GRQ40_13645) - 2824205..2826403 (-) 2199 WP_066146097.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  GRQ40_RS13650 (GRQ40_13650) - 2826552..2827064 (-) 513 WP_044744650.1 adenine phosphoribosyltransferase -
  GRQ40_RS13655 (GRQ40_13655) recJ 2827064..2829421 (-) 2358 WP_159720894.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GRQ40_RS13660 (GRQ40_13660) - 2829648..2830544 (-) 897 WP_159720187.1 cation diffusion facilitator family transporter -
  GRQ40_RS13665 (GRQ40_13665) secDF 2830652..2832904 (-) 2253 WP_159720188.1 protein translocase subunit SecDF -
  GRQ40_RS13670 (GRQ40_13670) - 2833011..2833313 (-) 303 WP_052660996.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87930.22 Da        Isoelectric Point: 5.5585

>NTDB_id=411213 GRQ40_RS13655 WP_159720894.1 2827064..2829421(-) (recJ) [Anoxybacillus sp. PDR2]
MLTAKTRWDVKRPDKNKVDQLMKELDISPLVASLLVNRGIDTARAAAAFLYPEKQPFHDPFLLDDMHRAIERIQQAVRNE
EHILVFGDYDADGVSSTTVMMSALSQIGAKADFYIPNRFTEGYGPNKNAFCLAKEKGVSLIITVDNGIAAVEEVALANEL
GMDVIITDHHEPGPTLPEALAIIHPKKPGSTYPFRDLAGVGVAFKLAHALLGEVPEHLLDIVAIGTIADLVPLTGENRLL
AAKGIEQLRDTKRIGLRALLKQCGTNLSQVNEETVGFAIAPRINAVGRLGDAAPAVRLLMTEDEAEAHELAKKTEMLNRE
RQKLVNEMTEEAVAIIQEQFPPEKQHVLVVAKEGWNVGVIGIVASRLVEQFYRPTIVLSIDPEKGIAKGSARSIQGFDLF
AHLSKCRDILPHFGGHPMAAGMTLSLEDVDELRERLNAFAKEALTEEDFIPITSIDAACSIDDITLGALEQIEKLSPFGT
ENPRPLILIEDASVQSMRRIGADQSHIKIVFEQDGATLECVGFGYGYLHDEIAPNAKVSIVGSLSVNEWNHLRKPQLMIC
DAAVREWQLFDIRGIQHVHSLFSLLPADRRRFIAFGQETIGALRLQSYREEIDVIEAIEEAKRLSLDGSYVVLLDLPPTL
EMIKVLLSYSLPARIYALFYQRETHFFSTLPTRDHFKWFYAFLMKRGTFHLEKYGDELARSRGWTKETIRFMVQVFLELQ
FVTVDNGIVSLVPNPKKRDLAESPTYRLKQAQLELENMLLYSSYEQLKRTFSEIKALRTYEEAKM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=411213 GRQ40_RS13655 WP_159720894.1 2827064..2829421(-) (recJ) [Anoxybacillus sp. PDR2]
ATGTTAACGGCAAAAACTCGATGGGATGTGAAGCGTCCCGATAAAAATAAAGTGGATCAGTTAATGAAGGAGCTGGATAT
TTCTCCACTTGTGGCTTCGCTGCTTGTGAACCGTGGAATTGATACTGCACGAGCGGCGGCCGCCTTTTTATATCCAGAAA
AACAACCGTTTCACGATCCTTTTTTGCTAGATGATATGCATCGAGCTATAGAAAGGATTCAGCAGGCGGTGCGAAATGAG
GAGCATATTCTTGTATTCGGAGATTATGATGCTGACGGTGTAAGCAGCACAACCGTCATGATGAGTGCATTGTCTCAAAT
AGGCGCGAAAGCGGATTTTTACATACCCAATCGCTTTACTGAAGGATATGGACCAAATAAAAATGCTTTTTGTCTTGCCA
AAGAAAAAGGCGTGTCTTTAATCATCACAGTGGACAATGGAATTGCTGCAGTCGAAGAAGTGGCGCTGGCAAATGAGCTA
GGCATGGACGTTATTATTACCGATCATCATGAGCCGGGACCTACACTTCCTGAAGCATTGGCGATTATTCACCCGAAAAA
GCCGGGCAGCACATACCCGTTTCGTGATTTAGCTGGGGTAGGCGTGGCTTTTAAGCTGGCGCATGCATTGCTTGGAGAAG
TGCCAGAGCATTTGCTTGATATCGTGGCGATTGGAACCATTGCTGACCTTGTGCCGCTTACAGGTGAAAATCGTCTGCTT
GCCGCAAAAGGAATCGAGCAATTGCGAGATACAAAGCGCATCGGGTTGCGTGCTCTATTGAAGCAATGCGGTACCAACTT
GAGCCAAGTGAATGAGGAAACAGTCGGGTTTGCCATCGCTCCGCGAATTAATGCGGTCGGAAGACTTGGAGACGCCGCCC
CTGCTGTTCGGCTGCTCATGACGGAGGATGAAGCAGAAGCGCACGAACTAGCGAAAAAAACGGAGATGCTGAATCGGGAG
CGGCAAAAGCTAGTAAATGAAATGACGGAAGAAGCCGTTGCGATCATACAGGAGCAATTTCCTCCTGAGAAACAGCATGT
GCTTGTTGTAGCAAAAGAAGGCTGGAATGTTGGAGTTATCGGGATCGTAGCCTCTCGGCTTGTCGAACAATTTTACCGGC
CGACCATTGTTCTAAGTATCGATCCGGAAAAAGGGATTGCGAAAGGATCGGCGCGCAGCATTCAAGGATTTGATCTATTT
GCCCATTTGTCAAAATGCCGCGATATTTTGCCCCATTTTGGCGGACATCCGATGGCGGCTGGAATGACCCTTTCACTTGA
AGATGTCGATGAATTGCGGGAACGCCTTAATGCGTTTGCGAAGGAAGCATTGACCGAGGAAGATTTTATCCCGATCACTT
CCATTGATGCAGCCTGCTCGATTGATGACATTACCTTAGGGGCATTAGAACAAATCGAAAAACTCTCCCCATTTGGGACA
GAGAACCCGCGCCCTCTTATTTTAATTGAAGACGCATCCGTGCAAAGCATGCGGCGTATCGGCGCTGACCAATCACATAT
AAAAATCGTGTTTGAACAGGATGGGGCAACACTGGAATGTGTCGGATTTGGCTATGGATATTTGCATGATGAAATTGCTC
CTAATGCAAAGGTTTCCATTGTTGGATCATTATCGGTAAATGAATGGAACCATCTTCGCAAACCGCAGCTGATGATTTGT
GATGCCGCTGTGCGAGAATGGCAGCTGTTTGATATAAGAGGAATCCAGCATGTGCACTCTCTTTTTTCGCTGCTTCCCGC
TGATCGGCGCCGGTTTATCGCATTTGGTCAAGAGACAATAGGAGCGCTTCGTCTGCAGTCTTATCGTGAAGAAATAGATG
TCATTGAAGCGATAGAGGAAGCGAAGCGTCTTTCTTTGGATGGGAGCTATGTCGTTTTGCTTGACCTGCCGCCAACTTTA
GAAATGATAAAAGTTTTATTAAGTTATAGTTTACCTGCGCGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
CAGCACATTGCCGACGCGCGACCATTTTAAGTGGTTTTATGCGTTTTTGATGAAGCGAGGTACATTCCATCTCGAAAAAT
ACGGCGATGAGCTGGCGCGCTCGCGCGGTTGGACGAAGGAAACGATTCGTTTTATGGTGCAAGTATTTTTAGAATTGCAG
TTTGTGACGGTGGACAATGGGATCGTTTCGCTTGTTCCAAATCCCAAAAAGCGCGATTTAGCCGAATCTCCTACGTATCG
TTTAAAACAGGCTCAGCTTGAGCTGGAAAATATGCTTTTATATTCATCGTATGAACAACTTAAGCGCACCTTTTCCGAAA
TAAAAGCGTTGCGGACATATGAGGAGGCAAAAATGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(317-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.943

98.599

0.552

Multiple sequence alignment