Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GRQ40_RS13570 Genome accession   NZ_CP047158
Coordinates   2807458..2809815 (-) Length   785 a.a.
NCBI ID   WP_159720179.1    Uniprot ID   -
Organism   Anoxybacillus sp. PDR2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2802458..2814815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRQ40_RS13545 (GRQ40_13545) - 2802553..2802810 (-) 258 WP_044744634.1 IreB family regulatory phosphoprotein -
  GRQ40_RS13550 (GRQ40_13550) alaS 2802884..2805520 (-) 2637 WP_044744635.1 alanine--tRNA ligase -
  GRQ40_RS13555 (GRQ40_13555) - 2805854..2806915 (-) 1062 WP_369824171.1 AI-2E family transporter -
  GRQ40_RS13560 (GRQ40_13560) - 2807007..2807141 (-) 135 WP_172798665.1 DUF3918 family protein -
  GRQ40_RS13565 (GRQ40_13565) - 2807163..2807354 (-) 192 WP_044744703.1 hypothetical protein -
  GRQ40_RS13570 (GRQ40_13570) recD2 2807458..2809815 (-) 2358 WP_159720179.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GRQ40_RS13575 (GRQ40_13575) - 2809836..2810498 (-) 663 WP_080862254.1 tetratricopeptide repeat protein -
  GRQ40_RS13580 (GRQ40_13580) mnmA 2810575..2811690 (-) 1116 WP_159720180.1 tRNA 2-thiouridine(34) synthase MnmA -
  GRQ40_RS13585 (GRQ40_13585) - 2811703..2812848 (-) 1146 WP_159720181.1 cysteine desulfurase family protein -
  GRQ40_RS13590 (GRQ40_13590) cymR 2812872..2813288 (-) 417 WP_044744641.1 cysteine metabolism transcriptional regulator CymR -
  GRQ40_RS13595 (GRQ40_13595) - 2813299..2813937 (-) 639 WP_159720182.1 YitT family protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88417.23 Da        Isoelectric Point: 5.1171

>NTDB_id=411212 GRQ40_RS13570 WP_159720179.1 2807458..2809815(-) (recD2) [Anoxybacillus sp. PDR2]
MQRQESWALGEKSFIKGTHIVTIFHNESNLYSVVRIHVEETNEGYDEQEVVVTGYFPRMNEHDVYVFYGAFKDHPRFGRQ
YVAEYFRKEMPQTKEGLIYYLSSDLFKGIGKKTAEQIVEALGDQAISVILADPEALAKVPKLPKNKAKELYETLKEHQGL
EQIMIALSQFGFGPQLSMKIYQVYKEAALDVIQKNPYQLVEDVEGIGFRRADELGQQLGLSGSHPDRVRAACLYVIESDC
LQEGHVYVTKEQLLFKAKQLLESKRGEDIPPDMIERELLDLAKEGKVIHEDGRFYIPTLYFAEKGIITNIKRLLEQKVTG
FPEAEFLLALGRLEERLDVQYGPLQKDAIQQAISSPLFILTGGPGTGKTTVIKGIVEIFADLHGVSLDPKDYHKENPFPI
LLAAPTGRAAKRMSEATGLPAMTIHRLLGYNAAEGFTHHEDEPIEGNLLIVDEMSMVDTWLANQLLKSLPTGMQVILVGD
EDQLPSVGPGQVLKDLLKTSRIPTIRLTEVYRQAEGSSIIELAHCMKKGELPADLSSPKTDRSFIRCKAEQVVDVVRQIA
DNAWKKGYSVKDIQVLAPMYRGPAGIDRLNRTLQELFNPKSPQKRELSSGETVYRVGDKVLQLVNQPDQNVFNGDIGEIV
AIFYAKENTEQQDLVVVSFDGNEVTYTRQDLTQITHAYCCSIHKAQGSEFPIVILPVVKSYYRMLQRNLLYTAVTRSKKF
LILCGEEEAFRIGTARCDDGVRQTTLAEKIQQLFEPVDEMELPLDDAGIGMENVSPYDFMIEEAK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=411212 GRQ40_RS13570 WP_159720179.1 2807458..2809815(-) (recD2) [Anoxybacillus sp. PDR2]
TTGCAGCGGCAAGAATCATGGGCGTTAGGGGAAAAATCGTTTATTAAAGGGACGCATATCGTCACTATTTTTCATAACGA
AAGCAACCTTTATTCCGTGGTCCGCATTCACGTTGAAGAAACGAATGAAGGGTATGACGAGCAAGAGGTTGTTGTAACTG
GATATTTCCCGCGTATGAACGAACATGATGTTTATGTGTTTTACGGCGCTTTTAAAGATCACCCCAGATTTGGACGGCAA
TATGTAGCCGAGTATTTTCGAAAAGAAATGCCGCAAACAAAGGAAGGGTTGATCTATTATTTATCGAGCGATTTGTTTAA
GGGGATCGGAAAGAAAACAGCGGAACAAATTGTGGAAGCGCTCGGGGACCAAGCGATTTCAGTGATACTAGCAGATCCGG
AAGCGCTCGCGAAAGTGCCTAAGCTTCCGAAAAACAAAGCGAAAGAGCTATACGAAACGTTAAAGGAGCACCAAGGCCTT
GAACAAATTATGATTGCTCTTTCTCAGTTCGGCTTTGGTCCGCAGCTGTCAATGAAAATTTACCAAGTATATAAAGAAGC
TGCACTTGATGTCATTCAAAAAAATCCGTATCAGCTTGTCGAGGATGTAGAAGGGATTGGGTTTCGGCGAGCCGATGAGT
TAGGCCAGCAGCTCGGCCTTTCCGGCAGCCATCCAGATCGTGTCCGAGCCGCCTGTTTATATGTCATCGAAAGCGATTGT
TTGCAAGAGGGACATGTATATGTGACAAAAGAACAGTTGCTTTTTAAAGCTAAGCAGCTGCTTGAATCGAAAAGAGGAGA
GGACATTCCTCCTGACATGATTGAGCGTGAACTGCTTGATCTAGCCAAAGAGGGAAAAGTCATTCATGAAGATGGCCGCT
TTTATATTCCGACTCTTTACTTTGCGGAAAAAGGAATCATCACCAATATAAAGCGCCTGCTTGAACAAAAGGTAACAGGA
TTTCCAGAAGCGGAATTTTTGCTGGCGCTCGGCCGGTTGGAGGAGCGGTTGGATGTACAATATGGCCCGTTGCAAAAGGA
CGCGATTCAACAAGCGATTTCTTCCCCTCTGTTTATTTTGACAGGCGGGCCGGGAACGGGAAAAACAACGGTGATAAAAG
GGATTGTGGAGATTTTTGCCGACCTCCACGGCGTTTCGCTTGACCCGAAGGATTATCATAAAGAAAATCCTTTTCCGATT
TTGCTTGCTGCGCCAACAGGGAGAGCCGCAAAACGAATGAGCGAAGCGACAGGATTACCAGCGATGACGATCCATCGTTT
ACTTGGTTATAATGCTGCAGAAGGATTTACTCATCATGAAGATGAACCGATTGAAGGAAATTTGCTCATTGTCGATGAAA
TGTCCATGGTAGACACATGGCTAGCTAACCAATTGCTGAAGTCTCTTCCAACTGGTATGCAAGTCATTTTGGTCGGTGAT
GAGGATCAATTGCCGTCAGTCGGACCGGGGCAAGTATTAAAGGATTTGTTAAAAACGTCGCGAATTCCTACTATTCGCTT
GACCGAAGTATATCGTCAAGCAGAAGGATCCTCCATCATTGAATTGGCCCATTGTATGAAAAAAGGGGAGCTTCCTGCTG
ATCTAAGCTCTCCGAAAACAGACCGTTCCTTTATTCGCTGTAAAGCTGAACAAGTGGTTGATGTCGTGAGGCAAATTGCT
GATAATGCGTGGAAAAAAGGGTATTCGGTAAAAGATATTCAAGTGCTCGCCCCAATGTATCGCGGTCCTGCCGGCATCGA
TCGTCTCAATCGAACGCTTCAAGAGCTGTTTAATCCGAAATCGCCACAAAAGCGCGAGCTGTCCAGCGGCGAAACGGTTT
ATCGCGTTGGCGATAAGGTGTTGCAGCTTGTCAATCAACCCGATCAAAATGTGTTTAATGGCGATATTGGTGAAATTGTC
GCCATCTTTTACGCGAAAGAGAATACGGAACAGCAGGACTTGGTTGTCGTATCCTTTGATGGAAACGAAGTCACTTATAC
GAGACAGGATTTAACACAAATTACCCACGCTTATTGCTGTTCGATTCATAAGGCACAGGGCAGTGAATTTCCGATTGTGA
TTTTGCCGGTGGTGAAAAGCTATTATCGAATGCTACAGCGGAATTTGTTATATACAGCAGTGACAAGAAGCAAAAAATTT
TTAATTTTATGCGGTGAGGAGGAAGCGTTTCGCATTGGAACGGCACGCTGTGATGACGGGGTGAGGCAAACGACATTAGC
TGAAAAAATTCAACAGCTGTTTGAGCCTGTTGATGAAATGGAGTTGCCGTTGGATGATGCGGGGATCGGGATGGAAAACG
TTTCACCGTATGACTTTATGATAGAAGAAGCAAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-658)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.705

100

0.614

Multiple sequence alignment