Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H1R14_RS15070 Genome accession   NZ_CP059723
Coordinates   2725592..2726356 (+) Length   254 a.a.
NCBI ID   WP_096945251.1    Uniprot ID   -
Organism   Escherichia coli strain BUCT2930     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2720592..2731356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R14_RS15050 (H1R14_15045) acpT 2721546..2722133 (+) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -
  H1R14_RS15055 (H1R14_15050) nikA 2722244..2723818 (+) 1575 WP_000953361.1 nickel ABC transporter substrate-binding protein -
  H1R14_RS15060 (H1R14_15055) nikB 2723818..2724762 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  H1R14_RS15065 (H1R14_15060) nikC 2724759..2725592 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  H1R14_RS15070 (H1R14_15065) amiE 2725592..2726356 (+) 765 WP_096945251.1 nickel import ATP-binding protein NikD Regulator
  H1R14_RS15075 (H1R14_15070) nikE 2726353..2727159 (+) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  H1R14_RS15080 (H1R14_15075) nikR 2727165..2727566 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26850.40 Da        Isoelectric Point: 6.1382

>NTDB_id=411076 H1R14_RS15070 WP_096945251.1 2725592..2726356(+) (amiE) [Escherichia coli strain BUCT2930]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHAWETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=411076 H1R14_RS15070 WP_096945251.1 2725592..2726356(+) (amiE) [Escherichia coli strain BUCT2930]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGTGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398