Detailed information NTG0410963

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: GSR62_RS06380
• Genome accession: NZ_CP047141
• Coordinates: 1296812..1297648 (-)
• Length: 278 a.a.
• NCBI ID: WP_066024041.1
• Uniprot ID: -
• Organism: Ligilactobacillus animalis strain P38
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1291812..1302648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSR62_RS06355 (GSR62_06350)	-	1292011..1293267 (-)	1257	WP_066024037.1	DEAD/DEAH box helicase	-
GSR62_RS06360 (GSR62_06355)	-	1293279..1294295 (-)	1017	WP_035447414.1	Gfo/Idh/MocA family protein	-
GSR62_RS06365 (GSR62_06360)	-	1294517..1294888 (+)	372	WP_066024038.1	DUF4828 domain-containing protein	-
GSR62_RS06370 (GSR62_06365)	-	1294990..1295640 (-)	651	WP_066024039.1	ABC transporter ATP-binding protein	-
GSR62_RS06375 (GSR62_06370)	-	1295769..1296644 (-)	876	WP_066024040.1	CPBP family intramembrane glutamic endopeptidase	-
GSR62_RS06380 (GSR62_06375)	endA	1296812..1297648 (-)	837	WP_066024041.1	DNA/RNA non-specific endonuclease	Machinery gene
GSR62_RS06385 (GSR62_06380)	asnA	1297708..1298715 (-)	1008	WP_066024042.1	aspartate--ammonia ligase	-
GSR62_RS06390 (GSR62_06385)	-	1298904..1299551 (+)	648	WP_066024043.1	nitroreductase	-
GSR62_RS06395 (GSR62_06390)	-	1299607..1300032 (-)	426	WP_066024044.1	N-acetyltransferase	-
GSR62_RS06400 (GSR62_06395)	-	1300100..1300462 (+)	363	WP_066024045.1	iron chaperone	-
GSR62_RS06405 (GSR62_06400)	-	1301278..1301544 (-)	267	WP_005922582.1	hypothetical protein	-
GSR62_RS06410 (GSR62_06405)	-	1301638..1301805 (-)	168	WP_143452063.1	M20 family metallopeptidase	-
GSR62_RS06415 (GSR62_06410)	-	1301865..1301990 (-)	126	Protein_1216	helix-turn-helix domain-containing protein	-
GSR62_RS06420 (GSR62_06415)	-	1302185..1302472 (-)	288	WP_373878869.1	DUF4160 domain-containing protein	-

Sequence

Protein

• Length: 278 a.a.
• Molecular weight: 30336.94 Da
• Isoelectric Point: 10.4774

>NTDB_id=410963 GSR62_RS06380 WP_066024041.1 1296812..1297648(-) (endA) [Ligilactobacillus animalis strain P38]
MKFKKILTGFAAALMLSGAIGAPVTAEATTHYGGWRTHQKNSSSGSGELKKSTPSQQLAQTVLTPDVVKQLGGEQNLKWN
NSGAFIVNNNKTDLKAKVSSAPYATNEVDSLKRPTVANALLNRTTRQYKNRHQTNNGSTKWKPQGFKQLTNLSGAYNHAY
DRGHLLGYALVGNIRGFDASESNPKNIATQTAWANEANAKYSTGQNYYESLVRKALDRNKTVRYRVTNIYSGNNLVPAGA
HLEAKSSDGSLEYNVFIPNVQKGLKIDYATGHATKVNN

Nucleotide

• Length: 837 bp

>NTDB_id=410963 GSR62_RS06380 WP_066024041.1 1296812..1297648(-) (endA) [Ligilactobacillus animalis strain P38]
ATGAAGTTCAAAAAAATACTGACCGGATTTGCGGCAGCTTTGATGCTCAGTGGTGCGATCGGGGCACCGGTAACGGCCGA
AGCAACTACTCACTATGGTGGCTGGCGCACACATCAAAAAAATAGCTCGAGTGGCTCGGGTGAACTAAAAAAGAGCACCC
CATCACAACAATTAGCCCAAACAGTTTTAACACCAGATGTTGTTAAACAATTGGGTGGTGAGCAAAATCTCAAATGGAAC
AACAGTGGGGCTTTTATCGTTAATAACAACAAGACAGATCTAAAAGCTAAGGTTTCTAGTGCACCTTATGCAACAAATGA
AGTCGATAGCTTGAAACGTCCGACGGTGGCAAACGCCCTTTTGAATAGGACAACGCGTCAATACAAGAATCGCCACCAAA
CTAATAATGGTTCGACTAAATGGAAACCACAGGGCTTTAAGCAACTCACTAACTTAAGTGGCGCCTATAACCATGCTTAT
GATCGCGGTCACTTACTAGGGTATGCTTTAGTTGGAAATATTCGTGGTTTTGATGCGAGTGAGAGCAATCCTAAAAATAT
TGCGACTCAAACTGCTTGGGCTAATGAAGCTAATGCAAAGTATTCAACAGGCCAAAATTATTACGAAAGTCTTGTTCGAA
AAGCCTTGGATCGTAACAAGACTGTCCGTTATCGTGTGACAAATATCTATAGTGGTAATAATTTAGTCCCAGCAGGAGCT
CACTTGGAAGCCAAATCAAGTGATGGTTCGTTGGAATATAATGTTTTTATCCCTAATGTTCAAAAGGGCTTAAAGATCGA
CTATGCTACTGGTCATGCGACAAAAGTGAACAACTGA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (82-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	65.333	80.935	0.529
endA	Streptococcus pneumoniae D39	65.333	80.935	0.529
endA	Streptococcus pneumoniae R6	65.333	80.935	0.529
endA	Streptococcus pneumoniae TIGR4	65.333	80.935	0.529