Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H3M14_RS05785 Genome accession   NZ_CP059697
Coordinates   1145333..1147063 (+) Length   576 a.a.
NCBI ID   WP_061827392.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CBA3635     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140333..1152063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3M14_RS05745 (H3M14_05745) mgsA 1140765..1141187 (+) 423 WP_011374855.1 methylglyoxal synthase -
  H3M14_RS05750 (H3M14_05750) - 1141271..1141966 (+) 696 WP_011374854.1 YoaK family protein -
  H3M14_RS05755 (H3M14_05755) - 1141963..1142145 (-) 183 WP_016265279.1 hypothetical protein -
  H3M14_RS05760 (H3M14_05760) - 1142138..1142458 (-) 321 WP_016265278.1 hypothetical protein -
  H3M14_RS05765 (H3M14_05765) - 1142479..1143135 (-) 657 WP_016265277.1 type II CAAX endopeptidase family protein -
  H3M14_RS05770 (H3M14_05770) - 1143337..1143537 (+) 201 WP_004270328.1 cold-shock protein -
  H3M14_RS05775 (H3M14_05775) - 1143735..1144463 (-) 729 WP_016265276.1 ion transporter -
  H3M14_RS05780 (H3M14_05780) - 1144668..1145309 (+) 642 WP_016265275.1 TetR family transcriptional regulator -
  H3M14_RS05785 (H3M14_05785) rcrP 1145333..1147063 (+) 1731 WP_061827392.1 ABC transporter ATP-binding protein Regulator
  H3M14_RS05790 (H3M14_05790) rcrQ 1147063..1148940 (+) 1878 WP_011374847.1 ABC transporter ATP-binding protein Regulator
  H3M14_RS05795 (H3M14_05795) - 1149038..1150048 (+) 1011 WP_035146726.1 serine hydrolase -
  H3M14_RS05800 (H3M14_05800) manA 1150150..1151124 (+) 975 WP_016265273.1 mannose-6-phosphate isomerase, class I -
  H3M14_RS05805 (H3M14_05805) - 1151198..1151842 (+) 645 WP_016265272.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63782.95 Da        Isoelectric Point: 6.4076

>NTDB_id=410944 H3M14_RS05785 WP_061827392.1 1145333..1147063(+) (rcrP) [Latilactobacillus sakei strain CBA3635]
MIKLAKKRMSGLAVFGAVLFMVIQVVSNLYLPNLTSDIVNNGIAKGDIDYIWQAGFKMLGFSLISILAAICNVYLAAKTS
QGLGQKLRSDIYRKVINFSHDEMDQVGTSSLITRTTNDVVQIQNVVMMFLRMMIMAPIMLIGASFLAYQKNAQLTSIFVV
VLPLMAIFIGVVMYFAVPLFKAMQKKTDRINLVFREGLTGVRVIRAFRRDKFEQERFDDANLDYTQNAKKVYSIMSVMLP
VMTLIMSGTNIAITWMGGHLIADQAMQVGNLLAFMTYAMQILMSFMMLSMVFVFIPRAQASAVRINEVLDLQTPIENPEN
PKSFTDQTVSLAFDNVNFRYQNAEKLALEKIDFQASAGQTVAIIGGTGSGKSTLVNLIPRFYDVEAGQVQVDGLNVKDVT
LHDIHEQVAFVPQKANLFTGTIRENMQYGNPDATDDQIWHALEIAQSKDFVSELDGGLDSHVEQGGGNFSGGQRQRLAIA
RALVKRASVYVFDDSFSALDFKTDALLRKALKEDTEIQKSVVVIVGQRVSTVADADTILVLDEGQMVGKGTHAQLKATNA
TYQEIINSQIREGDEA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=410944 H3M14_RS05785 WP_061827392.1 1145333..1147063(+) (rcrP) [Latilactobacillus sakei strain CBA3635]
ATGATTAAACTTGCAAAAAAGAGAATGTCGGGCTTAGCCGTTTTCGGTGCTGTCTTATTCATGGTGATTCAAGTTGTCAG
TAACTTGTATCTCCCTAATTTGACGTCTGATATTGTCAATAACGGGATTGCCAAAGGAGATATTGATTATATCTGGCAAG
CCGGCTTTAAAATGCTCGGTTTTTCATTGATCAGTATCCTAGCCGCAATCTGTAACGTTTATTTAGCTGCTAAGACATCA
CAAGGTCTGGGGCAAAAATTACGATCAGATATTTATCGAAAGGTCATCAATTTCTCACACGATGAAATGGACCAAGTGGG
GACCTCTTCACTGATTACACGGACGACCAATGATGTTGTTCAAATTCAAAATGTGGTAATGATGTTCTTACGAATGATGA
TCATGGCCCCTATTATGTTGATTGGTGCCAGCTTCTTGGCTTACCAAAAGAACGCGCAATTAACATCAATCTTCGTCGTT
GTCTTACCATTGATGGCAATCTTTATCGGTGTCGTGATGTACTTTGCCGTGCCACTTTTCAAAGCGATGCAAAAGAAGAC
TGACCGGATTAACTTAGTTTTCCGTGAAGGCTTAACAGGGGTGCGGGTAATCCGTGCATTCCGTCGCGATAAGTTCGAAC
AGGAACGTTTTGACGATGCGAACTTAGATTACACACAAAATGCTAAAAAGGTCTACAGTATCATGTCTGTCATGTTACCT
GTGATGACATTGATTATGAGTGGGACAAACATTGCAATCACTTGGATGGGTGGTCACTTAATTGCTGATCAAGCCATGCA
AGTGGGGAACTTATTAGCCTTCATGACTTATGCGATGCAAATCTTAATGAGTTTCATGATGCTTTCAATGGTTTTCGTCT
TCATTCCACGGGCACAAGCATCAGCCGTTCGGATTAATGAAGTCTTGGATTTACAAACACCAATTGAAAATCCAGAAAAT
CCCAAGAGTTTTACAGATCAAACTGTCAGCTTGGCCTTCGATAATGTTAACTTCCGCTACCAAAATGCAGAAAAATTAGC
CTTAGAGAAGATTGATTTCCAAGCATCTGCTGGTCAAACCGTTGCGATTATCGGGGGGACTGGTTCAGGTAAATCAACCT
TGGTTAACTTGATTCCGCGTTTTTACGACGTTGAAGCCGGCCAAGTCCAAGTTGATGGGTTAAATGTCAAAGATGTGACA
TTGCATGATATTCATGAACAAGTCGCATTTGTACCGCAAAAAGCCAATCTCTTTACAGGGACGATTCGCGAAAATATGCA
ATATGGGAATCCGGATGCAACTGATGATCAGATTTGGCATGCACTTGAAATTGCCCAATCGAAGGATTTCGTTAGCGAAC
TTGATGGTGGCTTAGACAGTCACGTTGAACAAGGTGGCGGTAACTTCTCAGGTGGTCAACGTCAACGATTAGCGATTGCC
CGGGCATTAGTTAAACGCGCATCAGTTTATGTTTTTGATGATTCATTTTCAGCTTTAGATTTCAAGACGGATGCCCTTTT
ACGCAAAGCCTTGAAGGAAGATACTGAAATTCAAAAGAGTGTCGTCGTCATTGTTGGACAACGGGTCTCAACTGTGGCTG
ATGCCGATACAATCTTGGTCTTAGATGAAGGCCAAATGGTTGGTAAAGGCACGCATGCCCAATTAAAGGCAACAAATGCA
ACTTACCAAGAAATTATCAATTCACAAATCAGAGAGGGGGATGAAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(348-495)

ABC transporter transmembrane region (ABC_membrane)

(15-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.376

97.917

0.415