Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SGPB_RS03570 Genome accession   NC_015600
Coordinates   686995..687861 (+) Length   288 a.a.
NCBI ID   WP_013851660.1    Uniprot ID   -
Organism   Streptococcus pasteurianus ATCC 43144     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 681995..692861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS03540 (SGPB_0654) - 682080..682958 (+) 879 WP_003064089.1 F0F1 ATP synthase subunit gamma -
  SGPB_RS03545 (SGPB_0655) atpD 683025..684431 (+) 1407 WP_003064092.1 F0F1 ATP synthase subunit beta -
  SGPB_RS03550 (SGPB_0656) - 684444..684860 (+) 417 WP_013851659.1 F0F1 ATP synthase subunit epsilon -
  SGPB_RS03555 (SGPB_0657) - 685116..685352 (+) 237 WP_003064099.1 DUF1146 family protein -
  SGPB_RS03560 (SGPB_0658) murA 685415..686689 (+) 1275 WP_041974287.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGPB_RS03565 (SGPB_0659) - 686692..686880 (+) 189 WP_003064103.1 DNA-directed RNA polymerase subunit beta -
  SGPB_RS03570 (SGPB_0660) endA 686995..687861 (+) 867 WP_013851660.1 DNA/RNA non-specific endonuclease Machinery gene
  SGPB_RS03575 (SGPB_0661) pheS 688148..689191 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  SGPB_RS03580 - 689227..689719 (+) 493 Protein_669 GNAT family N-acetyltransferase -
  SGPB_RS03585 (SGPB_0663) pheT 689790..692195 (+) 2406 WP_013851661.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30849.99 Da        Isoelectric Point: 6.4945

>NTDB_id=41075 SGPB_RS03570 WP_013851660.1 686995..687861(+) (endA) [Streptococcus pasteurianus ATCC 43144]
MAKKSKLSKQIKSLLSLVILLVGIGTGWVTISDSNDPLNQVVSLITGDSSSEITSNQSGSDSATPTQALAETVLTDSVKE
QLGTNIEWNGAGAYIINNNQTSLNAKVSSQPYANNKTKTVQGQTVPTVANALLSKSTRQYKSREETGNGSTSWKPAGWHQ
VQDLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPDNVATQTAWANEANSESSTGQNYYESLVRKALDQNKRVRYRVTL
IYDGDNLLASGTHLEAKSSDGSLEFNVFIPNVQSGLTFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=41075 SGPB_RS03570 WP_013851660.1 686995..687861(+) (endA) [Streptococcus pasteurianus ATCC 43144]
ATGGCAAAGAAATCAAAATTGTCTAAACAGATAAAATCCCTGCTGTCTTTGGTGATTTTGTTAGTTGGGATTGGTACTGG
TTGGGTGACGATATCAGATTCGAACGACCCGCTCAATCAAGTCGTTTCGTTAATTACTGGTGATTCCTCTTCTGAAATAA
CATCAAATCAATCGGGTTCTGATTCAGCAACGCCAACACAAGCTTTAGCAGAGACGGTATTAACAGATAGTGTCAAAGAG
CAGTTGGGAACAAATATAGAATGGAATGGTGCGGGAGCCTATATTATCAATAATAATCAAACCTCCCTAAATGCAAAAGT
TTCAAGTCAACCTTACGCCAACAACAAAACGAAAACGGTGCAAGGTCAGACCGTTCCAACGGTTGCTAATGCTTTGCTAA
GTAAGTCAACTCGTCAATACAAAAGTCGTGAGGAGACTGGAAATGGCTCAACGTCTTGGAAGCCAGCTGGTTGGCATCAA
GTTCAAGACCTTTCAGGGACTTATAGCCATGCGGTAGATCGTGGTCATTTGCTTGGCTATGCTTTGGTTGGTGGTCTAAA
AGGCTTTGATGCGTCAACAAGCAATCCTGACAATGTGGCAACACAGACTGCCTGGGCAAACGAGGCAAATTCGGAAAGTT
CAACTGGTCAAAATTACTATGAATCCCTTGTCCGCAAAGCTCTTGACCAAAATAAACGAGTTCGTTACCGTGTTACCTTG
ATTTACGATGGAGACAATCTTTTAGCAAGTGGCACGCATTTGGAAGCCAAATCATCCGATGGTAGTCTAGAATTTAACGT
CTTTATTCCAAATGTGCAAAGCGGACTAACATTTGATTATTATTCAGGTCAAGTTAGTGTGAATTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.129

86.111

0.569
  endA Streptococcus pneumoniae D39

66.129

86.111

0.569
  endA Streptococcus pneumoniae R6

66.129

86.111

0.569
  endA Streptococcus pneumoniae TIGR4

66.129

86.111

0.569

Multiple sequence alignment