Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GE573_RS17985 Genome accession   NZ_CP047119
Coordinates   3531286..3532065 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain AK-0     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3526286..3537065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS17965 (GE573_03588) trmFO 3526973..3528280 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GE573_RS17970 (GE573_03589) xerC 3528350..3529267 (+) 918 WP_190664271.1 tyrosine recombinase XerC -
  GE573_RS17975 (GE573_03590) hslV 3529283..3529828 (+) 546 WP_063095268.1 ATP-dependent protease subunit HslV -
  GE573_RS17980 (GE573_03591) hslU 3529845..3531248 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  GE573_RS17985 (GE573_03592) codY 3531286..3532065 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GE573_RS17990 (GE573_03593) flgB 3532419..3532808 (+) 390 WP_099566739.1 flagellar basal body rod protein FlgB -
  GE573_RS17995 (GE573_03594) flgC 3532808..3533260 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  GE573_RS18000 (GE573_03595) fliE 3533271..3533591 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  GE573_RS18005 (GE573_03596) fliF 3533634..3535244 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  GE573_RS18010 (GE573_03597) fliG 3535257..3536273 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  GE573_RS18015 (GE573_03598) fliH 3536266..3537021 (+) 756 WP_114354651.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=410710 GE573_RS17985 WP_003154263.1 3531286..3532065(+) (codY) [Bacillus velezensis strain AK-0]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=410710 GE573_RS17985 WP_003154263.1 3531286..3532065(+) (codY) [Bacillus velezensis strain AK-0]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGTATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGAAGAGGAAAGCTTTTGGGTTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCACGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGATCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGAACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment