Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | GQZ26_RS14630 | Genome accession | NZ_CP047085 |
| Coordinates | 2874562..2875341 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus paranthracis strain BC307 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2847942..2893976 | 2874562..2875341 | within | 0 |
Gene organization within MGE regions
Location: 2847942..2893976
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQZ26_RS14510 (GQZ26_14500) | - | 2848136..2848387 (-) | 252 | WP_001239754.1 | YlmC/YmxH family sporulation protein | - |
| GQZ26_RS14515 (GQZ26_14505) | - | 2848514..2849755 (-) | 1242 | WP_000592994.1 | pitrilysin family protein | - |
| GQZ26_RS14520 (GQZ26_14510) | - | 2849842..2850741 (-) | 900 | WP_000647527.1 | polysaccharide deacetylase family protein | - |
| GQZ26_RS14525 (GQZ26_14515) | pnp | 2850893..2853031 (-) | 2139 | WP_000076746.1 | polyribonucleotide nucleotidyltransferase | - |
| GQZ26_RS14530 (GQZ26_14520) | rpsO | 2853192..2853461 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| GQZ26_RS14535 (GQZ26_14525) | ribF | 2853562..2854533 (-) | 972 | WP_000766710.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| GQZ26_RS14540 (GQZ26_14530) | truB | 2854577..2855500 (-) | 924 | WP_000399344.1 | tRNA pseudouridine(55) synthase TruB | - |
| GQZ26_RS14545 (GQZ26_14535) | rbfA | 2855587..2855943 (-) | 357 | WP_063246741.1 | 30S ribosome-binding factor RbfA | - |
| GQZ26_RS14550 (GQZ26_14540) | - | 2855959..2856240 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| GQZ26_RS14555 (GQZ26_14545) | infB | 2856237..2858297 (-) | 2061 | WP_000036342.1 | translation initiation factor IF-2 | - |
| GQZ26_RS14560 (GQZ26_14550) | - | 2858302..2858613 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| GQZ26_RS14565 (GQZ26_14555) | rnpM | 2858614..2858886 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| GQZ26_RS14570 (GQZ26_14560) | nusA | 2858898..2860004 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| GQZ26_RS14575 (GQZ26_14565) | rimP | 2860021..2860491 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| GQZ26_RS14580 (GQZ26_14570) | - | 2860824..2865125 (-) | 4302 | WP_000059980.1 | PolC-type DNA polymerase III | - |
| GQZ26_RS14585 (GQZ26_14575) | - | 2865250..2866950 (-) | 1701 | WP_000814305.1 | proline--tRNA ligase | - |
| GQZ26_RS14590 (GQZ26_14580) | rseP | 2867060..2868316 (-) | 1257 | WP_001090248.1 | RIP metalloprotease RseP | - |
| GQZ26_RS14595 (GQZ26_14585) | dxr | 2868333..2869475 (-) | 1143 | WP_000790362.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| GQZ26_RS14600 (GQZ26_14590) | cdsA | 2869499..2870290 (-) | 792 | WP_000813584.1 | phosphatidate cytidylyltransferase | - |
| GQZ26_RS14605 (GQZ26_14595) | uppS | 2870308..2871084 (-) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| GQZ26_RS14610 (GQZ26_14600) | frr | 2871170..2871727 (-) | 558 | WP_000531500.1 | ribosome recycling factor | - |
| GQZ26_RS14615 (GQZ26_14605) | pyrH | 2871730..2872452 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| GQZ26_RS14620 (GQZ26_14610) | tsf | 2872519..2873406 (-) | 888 | WP_001018580.1 | translation elongation factor Ts | - |
| GQZ26_RS14625 (GQZ26_14615) | rpsB | 2873510..2874211 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| GQZ26_RS14630 (GQZ26_14620) | codY | 2874562..2875341 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| GQZ26_RS14635 (GQZ26_14625) | hslU | 2875419..2876810 (-) | 1392 | WP_000550081.1 | ATP-dependent protease ATPase subunit HslU | - |
| GQZ26_RS14640 (GQZ26_14630) | hslV | 2876833..2877375 (-) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| GQZ26_RS14645 (GQZ26_14635) | xerC | 2877418..2878317 (-) | 900 | WP_001101229.1 | tyrosine recombinase XerC | - |
| GQZ26_RS14650 (GQZ26_14640) | trmFO | 2878383..2879687 (-) | 1305 | WP_002028254.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| GQZ26_RS14655 (GQZ26_14645) | topA | 2879738..2881816 (-) | 2079 | WP_001286973.1 | type I DNA topoisomerase | - |
| GQZ26_RS14660 (GQZ26_14650) | dprA | 2881961..2882830 (-) | 870 | WP_000818031.1 | DNA-processing protein DprA | - |
| GQZ26_RS14665 (GQZ26_14655) | sucD | 2882918..2883820 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| GQZ26_RS14670 (GQZ26_14660) | sucC | 2883840..2885000 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| GQZ26_RS14675 (GQZ26_14665) | rnhB | 2885194..2885967 (-) | 774 | WP_001174725.1 | ribonuclease HII | - |
| GQZ26_RS14680 (GQZ26_14670) | ylqF | 2886019..2886909 (-) | 891 | WP_000236700.1 | ribosome biogenesis GTPase YlqF | - |
| GQZ26_RS14685 (GQZ26_14675) | lepB | 2886930..2887481 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| GQZ26_RS14690 (GQZ26_14680) | rplS | 2887583..2887927 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| GQZ26_RS14695 (GQZ26_14685) | trmD | 2888074..2888808 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| GQZ26_RS14700 (GQZ26_14690) | rimM | 2888808..2889323 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| GQZ26_RS14705 (GQZ26_14695) | - | 2889447..2889674 (-) | 228 | WP_000737403.1 | KH domain-containing protein | - |
| GQZ26_RS14710 (GQZ26_14700) | rpsP | 2889689..2889961 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| GQZ26_RS14715 (GQZ26_14705) | ffh | 2890062..2891411 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| GQZ26_RS14720 (GQZ26_14710) | - | 2891424..2891756 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| GQZ26_RS14725 (GQZ26_14715) | ftsY | 2891890..2892879 (-) | 990 | WP_000007646.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=410222 GQZ26_RS14630 WP_000421288.1 2874562..2875341(-) (codY) [Bacillus paranthracis strain BC307]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=410222 GQZ26_RS14630 WP_000421288.1 2874562..2875341(-) (codY) [Bacillus paranthracis strain BC307]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTGAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTGAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |