Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MS8320_RS18740 Genome accession   NZ_CP059339
Coordinates   3791323..3792087 (+) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain MS8320     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3786323..3797087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS8320_RS18720 (MS8320_3652) acpT 3787277..3787864 (+) 588 WP_000285790.1 4'-phosphopantetheinyl transferase AcpT -
  MS8320_RS18725 (MS8320_3654) nikA 3787975..3789549 (+) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  MS8320_RS18730 (MS8320_3655) nikB 3789549..3790493 (+) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  MS8320_RS18735 (MS8320_3656) nikC 3790490..3791323 (+) 834 WP_001008955.1 nickel ABC transporter permease subunit NikC -
  MS8320_RS18740 (MS8320_3657) amiE 3791323..3792087 (+) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  MS8320_RS18745 (MS8320_3658) nikE 3792084..3792890 (+) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  MS8320_RS18750 (MS8320_3659) nikR 3792896..3793297 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  MS8320_RS18755 (MS8320_3660) yhhJ 3793306..3794430 (-) 1125 WP_001314210.1 ABC transporter permease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=409817 MS8320_RS18740 WP_001136232.1 3791323..3792087(+) (amiE) [Escherichia coli strain MS8320]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=409817 MS8320_RS18740 WP_001136232.1 3791323..3792087(+) (amiE) [Escherichia coli strain MS8320]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGAATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398