Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SSUD12_RS10280 Genome accession   NC_017621
Coordinates   2092232..2093515 (+) Length   427 a.a.
NCBI ID   WP_014638805.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2087232..2098515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS10250 (SSUD12_2072) - 2088030..2088746 (-) 717 WP_014636729.1 DUF554 domain-containing protein -
  SSUD12_RS10255 (SSUD12_2073) - 2088751..2089497 (-) 747 WP_014638799.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SSUD12_RS10260 (SSUD12_2074) prmA 2089499..2090452 (-) 954 WP_014638800.1 50S ribosomal protein L11 methyltransferase -
  SSUD12_RS10265 (SSUD12_2076) - 2091000..2091353 (-) 354 WP_014638802.1 ASCH domain-containing protein -
  SSUD12_RS10270 (SSUD12_2077) - 2091355..2091825 (-) 471 WP_014638803.1 DUF3013 family protein -
  SSUD12_RS10275 (SSUD12_2078) - 2091827..2092162 (-) 336 WP_014638804.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  SSUD12_RS10280 (SSUD12_2079) rarA 2092232..2093515 (+) 1284 WP_014638805.1 replication-associated recombination protein A Machinery gene
  SSUD12_RS10290 (SSUD12_2080) nrdG 2093996..2094553 (-) 558 WP_002939123.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SSUD12_RS10300 (SSUD12_2081) - 2094740..2095234 (-) 495 WP_024389626.1 GNAT family N-acetyltransferase -
  SSUD12_RS10305 (SSUD12_2082) - 2095236..2096582 (-) 1347 WP_014638807.1 bifunctional metallophosphatase/5'-nucleotidase -
  SSUD12_RS11995 (SSUD12_2083) - 2096584..2096718 (-) 135 WP_014638808.1 hypothetical protein -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 47199.86 Da        Isoelectric Point: 6.5833

>NTDB_id=40914 SSUD12_RS10280 WP_014638805.1 2092232..2093515(+) (rarA) [Streptococcus suis D12]
MPANLALRMRPKSIDDVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESEGGRHIDLDAVENSLQKSYISMDKNGDAHYD
ILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVI
DLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLNADYFTAN
DTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=40914 SSUD12_RS10280 WP_014638805.1 2092232..2093515(+) (rarA) [Streptococcus suis D12]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGACGTCATCGGTCAGGAGCACCTGGTCGGTCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCAGGGATTGGCAAGACCT
CTATCGCCTCTGCCATTGCTGGCACGACCAAGTATGCCTTTCGAACCTTTAATGCCACGACCGACAACCAAAAACGCCTA
CAAGAGATTGCCGAAGAAGCCAAGTTTTCTGGTGGTCTGGTTCTCATGCTCGATGAGATTCATCGCCTCAACAAAACTAA
ACAGGACTTCCTGCTTCCTCTTTTGGAAAATGGCAATATCATCATGATTGGGGCAACAACAGAAAATCCATTTTTTTCTA
TTTTGCCTGCCATTCGCAGTCGGGTGCAGATTTTTGAATTACAACCCTTGAAAACCAGCCACATCCGACAGGCTCTGGAA
CTGGCTTTGACAGACAGCGAACGCGGTTTTGACTTCCCTGTCACCATTGAACCTGAGGCTCTGGATTTCCTAGCAAATGC
GACAAACGGCGACCTCCGTGCCGCCTATAATTCACTAGAACTGGCTGTACTGTCTACCAAAGAAAGCGAGGGCGGACGCC
ATATCGACTTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTACGAC
ATCCTCTCCGCCCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCAGCTCGTTTGATTGAGGC
CGAAGACCTACCTAGCCTGGCCCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCACAGA
TTCATACGGTGACTGCCCTTGAAGCCGCCCAGAAAATTGGCTTTCCAGAGGCACGCATTTTGATTGCCAATGTGGTGATT
GATTTGGCTCTTTCTCCCAAGTCCAACTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTGCGAAAGAACGGTCA
TCTGCCTATTCCAAATCATCTTCGGGATGGCCACTATGCTGGCAGCAAGGAGCTGGGAAATGCTATTGGCTACCAGTATC
CGCATGCCTATCCTGAAAAATGGGTGGACCAACAATACCTGCCCGATAAGTTACTGAATGCGGACTACTTCACTGCCAAC
GACACTGGAAAATATGAGCGTGCCTTGGGCATGACCCAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAATCC
TTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-415)

AAA C-terminal domain (AAA_assoc_2)

(173-250)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.048

97.892

0.588

Multiple sequence alignment