Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PGTDC60_RS01940 Genome accession   NC_015571
Coordinates   465049..465789 (+) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis TDC60     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460049..470789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGTDC60_RS01920 (PGTDC60_0430) aspS 460488..462251 (-) 1764 WP_005875297.1 aspartate--tRNA ligase -
  PGTDC60_RS12005 - 462437..462685 (-) 249 WP_148271468.1 DUF1661 domain-containing protein -
  PGTDC60_RS01925 (PGTDC60_0431) ribD 462682..463674 (-) 993 WP_013815406.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  PGTDC60_RS01930 (PGTDC60_0432) prmC 463699..464580 (+) 882 WP_013815407.1 peptide chain release factor N(5)-glutamine methyltransferase -
  PGTDC60_RS01935 (PGTDC60_0433) - 464577..465065 (+) 489 WP_013815408.1 regulatory protein RecX -
  PGTDC60_RS01940 (PGTDC60_0434) comF 465049..465789 (+) 741 WP_005875257.1 ComF family protein Machinery gene
  PGTDC60_RS01945 (PGTDC60_0435) - 465919..467988 (-) 2070 WP_043890003.1 M13 family metallopeptidase -
  PGTDC60_RS01950 (PGTDC60_0436) - 468007..468909 (-) 903 WP_005875328.1 hypothetical protein -
  PGTDC60_RS11835 (PGTDC60_0437) - 469091..469225 (-) 135 WP_005875263.1 hypothetical protein -
  PGTDC60_RS01955 (PGTDC60_0438) - 469329..469910 (-) 582 WP_004583806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=40909 PGTDC60_RS01940 WP_005875257.1 465049..465789(+) (comF) [Porphyromonas gingivalis TDC60]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=40909 PGTDC60_RS01940 WP_005875257.1 465049..465789(+) (comF) [Porphyromonas gingivalis TDC60]
ATGAGGAAGACTGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCGGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAGGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTCACCAAACGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment