Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GO175_RS03815 Genome accession   NZ_CP046855
Coordinates   693101..693802 (+) Length   233 a.a.
NCBI ID   WP_199251759.1    Uniprot ID   -
Organism   Vibrio fluvialis strain F8658     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 688101..698802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS03795 - 688536..689198 (+) 663 WP_020429360.1 hypothetical protein -
  GO175_RS03800 - 689254..691563 (+) 2310 WP_020429362.1 Tex family protein -
  GO175_RS03805 - 691645..692115 (-) 471 WP_020329343.1 hypothetical protein -
  GO175_RS03810 bioH 692244..693014 (-) 771 WP_020329342.1 pimeloyl-ACP methyl ester esterase BioH -
  GO175_RS03815 comF 693101..693802 (+) 702 WP_199251759.1 phosphoribosyltransferase family protein Machinery gene
  GO175_RS03820 nfuA 693903..694490 (+) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  GO175_RS03825 nudE 694636..695184 (+) 549 WP_020429366.1 ADP compounds hydrolase NudE -
  GO175_RS03830 cysQ 695208..696035 (+) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GO175_RS03835 - 696065..696823 (-) 759 WP_158147950.1 type II secretion system protein N -
  GO175_RS03840 - 696823..697329 (-) 507 WP_020329336.1 type II secretion system protein M -
  GO175_RS03845 gspL 697339..698550 (-) 1212 WP_158147951.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26411.40 Da        Isoelectric Point: 8.7303

>NTDB_id=408941 GO175_RS03815 WP_199251759.1 693101..693802(+) (comF) [Vibrio fluvialis strain F8658]
MLTNRLQKTMFSWLRPSCQLCGLPLESHSTQSLCGACLDWYAPTTRCARCGQPCEIATEQCGQCLTSPPSWHKLYCLGDY
RFPLSQSVHQLKYQRQFWQAQPLAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRL
ATPPQQGLNKEQRRRNLNQAFVLNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=408941 GO175_RS03815 WP_199251759.1 693101..693802(+) (comF) [Vibrio fluvialis strain F8658]
ATGTTAACCAATCGACTTCAAAAAACCATGTTTTCGTGGCTGAGACCGTCGTGTCAGCTGTGCGGTTTGCCCCTTGAATC
GCATAGCACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGTTGCGCTCGCTGCGGCCAGCCTT
GTGAAATCGCCACCGAGCAGTGTGGCCAATGCCTGACATCGCCGCCATCGTGGCACAAGCTCTATTGTTTGGGCGACTAC
CGTTTTCCGCTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCGCTGGCCGGATTGTT
AGCACCACGAATAGTATCGCCCGCCCCTCTGGTGACCTGCGTGCCGCTGCACTGGCGCCGCCATGCCTGGCGCGGTTTCA
ATCAAAGTGATGTTTTGGCGCGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGTTTTCCCGTCGCCTG
GCTACCCCGCCGCAGCAAGGCCTGAACAAAGAGCAGCGCCGGCGGAATCTCAACCAAGCTTTTGTCTTAAACAGTGCGCC
GAGCCACAGACATATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATGCAATTTACTGCTTG
ATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

63.09

100

0.631
  comF Vibrio campbellii strain DS40M4

49.167

100

0.506

Multiple sequence alignment