Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPX94_RS05105 Genome accession   NZ_CP046848
Coordinates   1101013..1101738 (-) Length   241 a.a.
NCBI ID   WP_078927153.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1096013..1106738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS05075 gspL 1096336..1097565 (+) 1230 WP_195707294.1 type II secretion system protein GspL -
  GPX94_RS05080 - 1097562..1098056 (+) 495 WP_154115151.1 type II secretion system protein M -
  GPX94_RS05085 - 1098058..1098816 (+) 759 WP_154115152.1 type II secretion system protein N -
  GPX94_RS05090 cysQ 1098845..1099672 (-) 828 WP_154115153.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPX94_RS05095 nudE 1099681..1100244 (-) 564 WP_078927155.1 ADP compounds hydrolase NudE -
  GPX94_RS05100 nfuA 1100350..1100937 (-) 588 WP_078927154.1 Fe-S biogenesis protein NfuA -
  GPX94_RS05105 comF 1101013..1101738 (-) 726 WP_078927153.1 ComF family protein Machinery gene
  GPX94_RS05110 bioH 1101825..1102607 (+) 783 WP_154115877.1 pimeloyl-ACP methyl ester esterase BioH -
  GPX94_RS05115 - 1102725..1103195 (+) 471 WP_078927151.1 ATP-dependent Lon protease -
  GPX94_RS05120 - 1103291..1105600 (-) 2310 WP_154115154.1 Tex family protein -
  GPX94_RS05125 - 1105685..1106302 (-) 618 WP_154115155.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27561.94 Da        Isoelectric Point: 8.8059

>NTDB_id=408866 GPX94_RS05105 WP_078927153.1 1101013..1101738(-) (comF) [Vibrio cincinnatiensis strain F8054]
MPPYFIASLKKISTWLAPACTLCHLPLDHQAQYGVCSACQSWFSPIQRCPRCGLPSVTATDVCGHCLHSSPPWQRLFCIG
DYQFPLSHTIHQFKYQRQFWQARHLAARLAQQIQHPAPLITSVPLHWRRQWYRGFNQSELLAQGLAKQLGCHFSPTIFAR
RLATPAQQSLTKQQREHNLKAAFQIKQLPEHSHIAIVDDVVTTGSTMRQLCYLLLEVGIERIDIYCLCRTPEPSDPLIPR
S

Nucleotide


Download         Length: 726 bp        

>NTDB_id=408866 GPX94_RS05105 WP_078927153.1 1101013..1101738(-) (comF) [Vibrio cincinnatiensis strain F8054]
ATGCCCCCTTATTTTATCGCTTCTCTTAAGAAAATAAGCACTTGGTTAGCTCCAGCCTGTACTTTATGTCACCTTCCTTT
AGATCATCAAGCGCAATATGGTGTCTGCTCCGCTTGCCAATCTTGGTTTTCTCCCATCCAGCGCTGCCCACGCTGTGGAC
TTCCCAGTGTAACCGCCACTGATGTATGCGGCCACTGTTTACACTCTTCCCCTCCTTGGCAGCGTCTCTTTTGCATTGGT
GACTATCAATTTCCGCTCAGCCACACCATTCACCAATTCAAATATCAACGCCAATTCTGGCAAGCACGTCACCTCGCCGC
CCGCCTTGCTCAGCAAATACAACACCCCGCCCCTTTAATCACCTCTGTTCCGCTTCACTGGCGCCGCCAATGGTACAGAG
GCTTTAATCAAAGTGAGTTATTAGCGCAAGGATTAGCAAAGCAACTCGGCTGTCATTTTTCCCCAACGATCTTTGCGCGT
CGGTTGGCAACACCCGCCCAACAATCATTGACCAAGCAACAACGAGAACATAATTTAAAAGCCGCATTTCAGATTAAACA
GCTTCCTGAACATTCACATATTGCGATTGTCGATGATGTAGTCACCACAGGCAGTACTATGCGACAATTATGCTATTTAC
TACTTGAAGTCGGCATCGAAAGGATTGATATTTACTGTCTATGCCGCACTCCTGAGCCGAGCGATCCCTTAATACCTCGA
TCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.177

93.776

0.564
  comF Vibrio campbellii strain DS40M4

46.903

93.776

0.44

Multiple sequence alignment