Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY12_RS21255 Genome accession   NZ_CP046846
Coordinates   3082117..3082977 (+) Length   286 a.a.
NCBI ID   WP_158139656.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3077117..3087977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS14155 greB 3077545..3078027 (-) 483 WP_000850497.1 transcription elongation factor GreB -
  GPY12_RS14160 - 3078397..3080718 (+) 2322 WP_158139654.1 Tex family protein -
  GPY12_RS14165 - 3080827..3081297 (-) 471 WP_000961395.1 hypothetical protein -
  GPY12_RS14170 bioH 3081420..3082181 (-) 762 WP_199250770.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY12_RS21255 comF 3082117..3082977 (+) 861 WP_158139656.1 ComF family protein Machinery gene
  GPY12_RS14180 nfuA 3083066..3083653 (+) 588 WP_000070175.1 Fe-S biogenesis protein NfuA -
  GPY12_RS14185 nudE 3083781..3084329 (+) 549 WP_000095822.1 ADP compounds hydrolase NudE -
  GPY12_RS14190 cysQ 3084352..3085179 (+) 828 WP_148554567.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY12_RS14195 - 3085220..3085978 (-) 759 WP_148554566.1 type II secretion system protein N -
  GPY12_RS14200 gspM 3085980..3086477 (-) 498 WP_199250803.1 type II secretion system protein GspM -
  GPY12_RS14205 gspL 3086487..3087698 (-) 1212 WP_199250771.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32747.92 Da        Isoelectric Point: 8.9344

>NTDB_id=408843 GPY12_RS21255 WP_158139656.1 3082117..3082977(+) (comF) [Vibrio mimicus strain F9458]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIRSANRQYEMSYPDSWLAMLTNWLRKTTAPLLIPECHLCRLALDKNSP
FGICTACQAWLEHGYRCARCGLPTLTPVEQCGQCLRQPPPWRKLICVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATK
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELARSLHTQYDSQLFARRRATPHQQGLSKAQRVQNLRDAFVLNHQPNQQ
HIAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSKG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=408843 GPY12_RS21255 WP_158139656.1 3082117..3082977(+) (comF) [Vibrio mimicus strain F9458]
ATGCCCCAGCCGTGCACCAATACTAGATCTTGTCCTTGCCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
CTCTATTTCCATCTTCATCAGGTCTGCCAATCGGCAATATGAGATGAGTTACCCTGATTCTTGGCTCGCTATGTTAACCA
ATTGGCTCAGAAAAACCACCGCACCACTGCTCATTCCTGAGTGCCATCTTTGTCGACTCGCGCTCGATAAAAACTCGCCA
TTTGGGATCTGCACCGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGTGCTCGCTGTGGTTTACCGACTCTCACCCC
TGTTGAACAGTGCGGGCAGTGTCTGCGTCAACCTCCGCCGTGGCGAAAACTGATTTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCACCGCGCTTGGCCAAGCTGCTCGCAACAAAG
ATTAACGAGCCAGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGTTTCAATCAAAGCGA
TCTGCTGGCACGCGAGTTAGCACGCTCATTACATACACAGTATGACAGCCAACTCTTTGCGCGCCGCCGAGCCACACCGC
ATCAACAAGGGCTCAGCAAAGCGCAGCGAGTGCAAAATTTGCGTGATGCATTTGTGCTAAATCATCAGCCAAACCAGCAA
CATATTGCGATTGTGGATGATGTTGTGACCACAGGCAGTACCATCCGACATTTATGCGATTTACTGCTTGATGTCGGCGT
ACAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCAAAGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(190-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

90.909

100

0.909
  comF Vibrio campbellii strain DS40M4

45.378

83.217

0.378

Multiple sequence alignment