Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY41_RS22275 Genome accession   NZ_CP046835
Coordinates   3037562..3038272 (-) Length   236 a.a.
NCBI ID   WP_199252181.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3032562..3043272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS22245 gspL 3032756..3033955 (+) 1200 WP_158124017.1 type II secretion system protein GspL -
  GPY41_RS22250 - 3033963..3034454 (+) 492 WP_017789549.1 type II secretion system protein M -
  GPY41_RS22255 - 3034456..3035217 (+) 762 WP_158124018.1 type II secretion system protein N -
  GPY41_RS22260 cysQ 3035335..3036162 (-) 828 WP_017789547.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY41_RS22265 nudE 3036177..3036731 (-) 555 WP_158124019.1 ADP compounds hydrolase NudE -
  GPY41_RS22270 nfuA 3036847..3037431 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  GPY41_RS22275 comF 3037562..3038272 (-) 711 WP_199252181.1 ComF family protein Machinery gene
  GPY41_RS22280 bioH 3038361..3039128 (+) 768 WP_158124021.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY41_RS22285 - 3039266..3039736 (+) 471 WP_011078928.1 hypothetical protein -
  GPY41_RS22290 ltrA 3040363..3041654 (+) 1292 Protein_2668 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27275.07 Da        Isoelectric Point: 9.8255

>NTDB_id=408657 GPY41_RS22275 WP_199252181.1 3037562..3038272(-) (comF) [Vibrio vulnificus strain 07-2444]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCRHCLTLFDAEPRCQRCGLPTLKVVPQCGQCLKSPPPWQKLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNVAGAFRLNRSALPHAIPKHVAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=408657 GPY41_RS22275 WP_199252181.1 3037562..3038272(-) (comF) [Vibrio vulnificus strain 07-2444]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCGGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAAAGGTTGTCCCCCAATGCGGTCAATGCCTGAAATCTCCACCCCCTTGGCAAAAGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ATCAAAGCGATGTGTTGGCAGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAACGCAACGTAGCGGGTGCCTTTCGCCTCAATCGCTCAGC
GCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.983

99.153

0.555
  comF Vibrio campbellii strain DS40M4

45.417

100

0.462

Multiple sequence alignment