Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY55_RS24645 Genome accession   NZ_CP046831
Coordinates   3060555..3061280 (+) Length   241 a.a.
NCBI ID   WP_031847314.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3055555..3066280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS24630 - 3056660..3058981 (+) 2322 WP_029855941.1 Tex family protein -
  GPY55_RS24635 - 3059115..3059579 (-) 465 WP_005459035.1 hypothetical protein -
  GPY55_RS24640 bioH 3059703..3060470 (-) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY55_RS24645 comF 3060555..3061280 (+) 726 WP_031847314.1 amidophosphoribosyltransferase Machinery gene
  GPY55_RS24650 nfuA 3061378..3061962 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GPY55_RS24655 nudE 3062183..3062752 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  GPY55_RS24660 cysQ 3062794..3063621 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY55_RS24665 - 3063908..3064669 (-) 762 WP_031847313.1 type II secretion system protein N -
  GPY55_RS24670 - 3064671..3065162 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27733.90 Da        Isoelectric Point: 8.7546

>NTDB_id=408563 GPY55_RS24645 WP_031847314.1 3060555..3061280(+) (comF) [Vibrio parahaemolyticus strain 2012AW-0224]
MLSHHWQNIMHRVLCSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=408563 GPY55_RS24645 WP_031847314.1 3060555..3061280(+) (comF) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCTGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GGTTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment