Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SSUD12_RS02490 Genome accession   NC_017621
Coordinates   482413..483147 (+) Length   244 a.a.
NCBI ID   WP_014637571.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 477413..488147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS02465 (SSUD12_0463) - 477913..478221 (-) 309 WP_002938710.1 DUF1827 family protein -
  SSUD12_RS02470 (SSUD12_0464) - 478276..478737 (-) 462 WP_002938708.1 NUDIX hydrolase -
  SSUD12_RS02475 (SSUD12_0465) clpE 478923..481151 (-) 2229 WP_014637570.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SSUD12_RS02480 (SSUD12_0466) - 481375..481605 (+) 231 WP_002938704.1 DUF1797 family protein -
  SSUD12_RS02485 (SSUD12_0467) - 481731..482420 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  SSUD12_RS02490 (SSUD12_0468) amiE 482413..483147 (+) 735 WP_014637571.1 amino acid ABC transporter ATP-binding protein Regulator
  SSUD12_RS02495 (SSUD12_0469) - 483381..484229 (+) 849 WP_014637572.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  SSUD12_RS02500 (SSUD12_0470) - 485658..485957 (+) 300 WP_014637573.1 hypothetical protein -
  SSUD12_RS02505 (SSUD12_0471) lepB 485947..486549 (+) 603 WP_014637574.1 signal peptidase I -
  SSUD12_RS02510 (SSUD12_0472) - 486642..486953 (+) 312 WP_225533365.1 hypothetical protein -
  SSUD12_RS02515 (SSUD12_0474) - 486954..487343 (-) 390 Protein_443 transposase -
  SSUD12_RS02520 (SSUD12_0473) - 487311..488129 (+) 819 Protein_444 class C sortase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26908.18 Da        Isoelectric Point: 4.8166

>NTDB_id=40856 SSUD12_RS02490 WP_014637571.1 482413..483147(+) (amiE) [Streptococcus suis D12]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVKFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=40856 SSUD12_RS02490 WP_014637571.1 482413..483147(+) (amiE) [Streptococcus suis D12]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTAAATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCAAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAAGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAACGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACTAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365

Multiple sequence alignment