Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SSUD12_RS01820 Genome accession   NC_017621
Coordinates   354668..355456 (+) Length   262 a.a.
NCBI ID   WP_011921926.1    Uniprot ID   A0A0H3MTH0
Organism   Streptococcus suis D12     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 349668..360456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS01795 (SSUD12_0334) - 349948..350907 (-) 960 WP_014637479.1 asparaginase -
  SSUD12_RS11795 - 350977..352342 (+) 1366 Protein_312 Cof-type HAD-IIB family hydrolase -
  SSUD12_RS01810 (SSUD12_0337) - 352358..352810 (-) 453 WP_004195772.1 universal stress protein -
  SSUD12_RS01815 (SSUD12_0338) - 352965..354179 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  SSUD12_RS01820 (SSUD12_0339) codY 354668..355456 (+) 789 WP_011921926.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SSUD12_RS01825 (SSUD12_0340) - 355469..355999 (+) 531 WP_029693245.1 cysteine hydrolase family protein -
  SSUD12_RS01830 (SSUD12_0341) rplS 356265..356612 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  SSUD12_RS01835 (SSUD12_0342) - 356744..358034 (+) 1291 Protein_318 IS4 family transposase -
  SSUD12_RS01840 (SSUD12_0345) - 358307..358981 (+) 675 WP_012774968.1 hydrolase -
  SSUD12_RS01845 (SSUD12_0346) gatC 359198..359500 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29307.34 Da        Isoelectric Point: 4.6190

>NTDB_id=40847 SSUD12_RS01820 WP_011921926.1 354668..355456(+) (codY) [Streptococcus suis D12]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=40847 SSUD12_RS01820 WP_011921926.1 354668..355456(+) (codY) [Streptococcus suis D12]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTTCCAGAAGGATATGTA
AAAGCAGTCGCGCAGGTTTATGATACGCAGGTTAACTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTTGAATCACG
ATCGACCTATCCAAATGGTCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MTH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.439

93.893

0.492

Multiple sequence alignment