Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HZ322_RS08950 Genome accession   NZ_CP059049
Coordinates   1900627..1901586 (-) Length   319 a.a.
NCBI ID   WP_017864949.1    Uniprot ID   -
Organism   Lactococcus lactis strain N8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895627..1906586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ322_RS08930 (HZ322_08930) - 1895930..1896676 (-) 747 WP_017864945.1 tyrosine-protein phosphatase -
  HZ322_RS08935 (HZ322_08935) - 1896879..1898687 (-) 1809 WP_017864946.1 oligopeptide ABC transporter substrate-binding protein -
  HZ322_RS08940 (HZ322_08940) oppC 1898793..1899677 (-) 885 WP_017864947.1 murein tripeptide/oligopeptide ABC transporter permease OppC -
  HZ322_RS08945 (HZ322_08945) oppB 1899687..1900646 (-) 960 WP_017864948.1 murein tripeptide/oligopeptide ABC transporter permease OppB -
  HZ322_RS08950 (HZ322_08950) amiE 1900627..1901586 (-) 960 WP_017864949.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF Regulator
  HZ322_RS08955 (HZ322_08955) oppD 1901583..1902598 (-) 1016 Protein_1761 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD -
  HZ322_RS08960 (HZ322_08960) rplT 1902825..1903184 (-) 360 WP_003132352.1 50S ribosomal protein L20 -
  HZ322_RS08965 (HZ322_08965) rpmI 1903346..1903546 (-) 201 WP_003132353.1 50S ribosomal protein L35 -
  HZ322_RS08970 (HZ322_08970) infC 1903675..1904169 (-) 495 WP_003132354.1 translation initiation factor IF-3 -
  HZ322_RS12910 - 1904632..1904760 (+) 129 WP_003132356.1 hypothetical protein -
  HZ322_RS08975 (HZ322_08975) - 1904779..1905327 (+) 549 WP_012898413.1 hypothetical protein -
  HZ322_RS08980 (HZ322_08980) - 1905338..1906042 (-) 705 WP_012898414.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35994.16 Da        Isoelectric Point: 9.3041

>NTDB_id=408459 HZ322_RS08950 WP_017864949.1 1900627..1901586(-) (amiE) [Lactococcus lactis strain N8]
MSEILNLKDLKVYYPIRSGFFNRVTDNVLAVDGVDLTIHEGETVGLVGESGSGKSTIGKTIVGLEQMTSGRLIYKGQDVS
KKKIRNQLKYNKDVQMIFQDAFSSLNPRKTIYDIIAEPIRNFEKLDANTENKRIHELLDIVGLPKQALEQYPFQFSGGQQ
QRIGIARAVATNPKLIVADEPVSALDLSVQAQVLNFMKLIQKNLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVEKGTRR
DIFDEPQHIYTKRLLSAIPSIDVTRRAENRENRLKVEQDFEDKKANFYDKDGQALPLQKLSQSHWAALPKGGENVESNY

Nucleotide


Download         Length: 960 bp        

>NTDB_id=408459 HZ322_RS08950 WP_017864949.1 1900627..1901586(-) (amiE) [Lactococcus lactis strain N8]
GTGAGCGAAATTCTTAATTTAAAGGACTTAAAAGTTTATTATCCTATTCGATCTGGTTTCTTTAATCGAGTGACAGATAA
TGTTTTAGCCGTTGATGGAGTAGATTTAACGATTCATGAAGGAGAAACTGTCGGTTTAGTTGGTGAATCTGGCTCTGGAA
AATCAACGATTGGCAAAACAATTGTTGGTTTAGAACAAATGACATCAGGACGATTGATTTACAAAGGACAAGATGTCAGC
AAAAAAAAGATAAGAAACCAGCTCAAATACAATAAAGATGTTCAAATGATTTTTCAAGATGCATTTTCGAGTTTGAATCC
ACGGAAAACAATTTACGATATCATTGCGGAGCCTATTCGGAATTTTGAAAAATTAGATGCTAATACAGAAAATAAACGGA
TTCATGAATTATTGGATATTGTTGGACTACCTAAACAAGCTTTAGAACAGTATCCTTTCCAATTTTCTGGAGGTCAACAA
CAAAGAATTGGAATCGCACGGGCAGTTGCTACTAATCCTAAGTTAATTGTGGCAGATGAACCAGTTTCAGCATTAGACTT
ATCTGTTCAAGCTCAAGTTTTGAATTTCATGAAGCTCATTCAAAAGAACTTGGGAATTGCATTTCTTTTTATTTCTCATG
ATTTAGGGGTTGTCCGCCATATGACCGATAATATTGCGGTCATGCACAACGGTCGAATTGTCGAAAAAGGAACACGAAGA
GATATTTTTGATGAGCCACAGCACATTTATACTAAACGACTCTTATCTGCTATCCCTTCGATTGATGTTACAAGAAGAGC
GGAAAATCGGGAAAACCGTCTAAAAGTTGAACAAGACTTTGAGGATAAAAAAGCAAACTTTTATGATAAAGACGGACAGG
CTTTGCCCTTGCAAAAATTAAGTCAGAGCCATTGGGCAGCTTTGCCAAAAGGAGGGGAAAATGTGGAAAGTAATTATTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(32-182)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(234-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

35.952

100

0.373
  amiE Streptococcus thermophilus LMG 18311

35.952

100

0.373
  amiE Streptococcus thermophilus LMD-9

35.952

100

0.373
  amiF Streptococcus thermophilus LMD-9

47.718

75.549

0.361
  amiF Streptococcus thermophilus LMG 18311

47.718

75.549

0.361
  amiF Streptococcus salivarius strain HSISS4

46

78.37

0.361