Detailed information NTG0040844

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: SSUD12_RS01110
• Genome accession: NC_017621
• Coordinates: 203394..205886 (-)
• Length: 830 a.a.
• NCBI ID: WP_014637372.1
• Uniprot ID: -
• Organism: Streptococcus suis D12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 198394..210886

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUD12_RS01085 (SSUD12_0189)	dinB	199091..200158 (+)	1068	WP_014637367.1	DNA polymerase IV	-
SSUD12_RS01090 (SSUD12_0190)	-	200202..200621 (+)	420	WP_014637368.1	Rrf2 family transcriptional regulator	-
SSUD12_RS01095 (SSUD12_0191)	-	200860..201486 (+)	627	WP_014637369.1	NAD(P)-dependent oxidoreductase	-
SSUD12_RS01100 (SSUD12_0192)	-	201591..202511 (+)	921	WP_014637370.1	1-phosphofructokinase family hexose kinase	-
SSUD12_RS01105 (SSUD12_0193)	-	202594..203289 (-)	696	WP_014637371.1	hypothetical protein	-
SSUD12_RS01110 (SSUD12_0194)	recD/recD2/recDB	203394..205886 (-)	2493	WP_014637372.1	ATP-dependent RecD-like DNA helicase	Machinery gene
SSUD12_RS01115 (SSUD12_0195)	lepB	206257..206886 (-)	630	WP_002935959.1	signal peptidase I	-
SSUD12_RS01120 (SSUD12_0196)	rnhC	206896..207786 (-)	891	WP_014637373.1	ribonuclease HIII	-
SSUD12_RS01125 (SSUD12_0197)	-	207871..208854 (+)	984	WP_014637374.1	Gfo/Idh/MocA family protein	-
SSUD12_RS01130 (SSUD12_0198)	-	209203..210546 (+)	1344	WP_014637375.1	LysM peptidoglycan-binding domain-containing protein	-

Sequence

Protein

• Length: 830 a.a.
• Molecular weight: 93313.68 Da
• Isoelectric Point: 4.5668

>NTDB_id=40844 SSUD12_RS01110 WP_014637372.1 203394..205886(-) (recD/recD2/recDB) [Streptococcus suis D12]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSRKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRRTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELETMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLEADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNDQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKEALAEKAESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPEKTSPEPT
EYILTVDNLLTIDPMIGIEQADIEEFFNLK

Nucleotide

• Length: 2493 bp

>NTDB_id=40844 SSUD12_RS01110 WP_014637372.1 203394..205886(-) (recD/recD2/recDB) [Streptococcus suis D12]
ATGAACGAAGTGTATTTTACCGGCACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTTAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGTCTATCCC
GTAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGCATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCGTACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGCCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGACGTTGAGGCTGCT
ATAGCAGAGCTGGAAACTATGTCTTCCCTGACCTACGATGACATTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGTAAAACAACAGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGATCTGACTCGCAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGGCTGCCTTCTGCCACCATCCACCGCCATCTGGGGCTTGTTGAAGGACAGGAAGAATCCTACCGAGA
TGATTACCTCGAAGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATTTCCTCCCAAACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCTTCTGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCCTGAAAATTGACAAGCTACCCAGCATCACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACTATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGGGCTCTGCCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCCATCAAGTCGGGCATTCCTGCAAACGAAGTCCAA
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCACAACGATCAAGCCTTCCGCCAAGGTGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGTGACTTAGGCTACATCACCGACCTCCTACCTGCCAAATATACGGATTCCAAACAGGATGAA
ATCACCATCAACTTCGACGGTAGCGAAGTCACCTATCCACGCAATGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTAGTCATCCTTCCCATCACGCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGTAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGAACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGATAGCAAGGAAGC
TTTAGCTGAAAAAGCCGAAAGCAAAACAGCTACAACCACGCAAACCCAGCCCCCTACTCAGCCAGACAGAAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCGAACCCACA
GAATACATTTTGACTGTAGATAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAACCTTAAGTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• AAA domain (AAA_30) (332-529)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (575-645)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (663-710)

• Helix-hairpin-helix domain (HHH_5) (97-145)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.974	91.566	0.384