Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY06_RS20080 Genome accession   NZ_CP046820
Coordinates   1288104..1288964 (+) Length   286 a.a.
NCBI ID   WP_158120093.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283104..1293964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS11620 greB 1283547..1284029 (-) 483 WP_000850492.1 transcription elongation factor GreB -
  GPY06_RS11625 - 1284272..1286593 (+) 2322 WP_158120091.1 Tex family protein -
  GPY06_RS11630 - 1286688..1287158 (-) 471 WP_000961395.1 hypothetical protein -
  GPY06_RS11635 bioH 1287407..1288168 (-) 762 WP_202982027.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY06_RS20080 comF 1288104..1288964 (+) 861 WP_158120093.1 phosphoribosyltransferase family protein Machinery gene
  GPY06_RS11645 nfuA 1289052..1289639 (+) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  GPY06_RS11650 nudE 1289778..1290326 (+) 549 WP_158120094.1 ADP compounds hydrolase NudE -
  GPY06_RS11655 cysQ 1290349..1291176 (+) 828 WP_158120095.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY06_RS11660 - 1291228..1291986 (-) 759 WP_158120096.1 type II secretion system protein N -
  GPY06_RS11665 - 1291988..1292485 (-) 498 WP_158120097.1 type II secretion system protein M -
  GPY06_RS11670 gspL 1292495..1293706 (-) 1212 WP_055031375.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32632.63 Da        Isoelectric Point: 8.4124

>NTDB_id=408387 GPY06_RS20080 WP_158120093.1 1288104..1288964(+) (comF) [Vibrio metoecus strain 2011V-1015]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTLECHLCRLALDTNSP
FGVCSACQAWLEHCYRCARCGLPTLTSVDQCGQCLRQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLANLLATK
ISEPAPLLCSVPLHWRRRWQRGFNQSDLLARELARSLNTHYDPLLFARRRATPHQQGLSKAQRIKNLRDAFTLNHPPNQQ
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=408387 GPY06_RS20080 WP_158120093.1 1288104..1288964(+) (comF) [Vibrio metoecus strain 2011V-1015]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCTGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACTGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCTC
TGTTGATCAGTGCGGGCAGTGTCTGCGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATATCAGCGCCAGTTTTGGCAAGCGCCACGCTTGGCTAATCTGCTCGCAACAAAA
ATTAGCGAGCCCGCCCCTTTGTTGTGCAGTGTTCCGCTACATTGGCGGCGACGTTGGCAACGCGGTTTCAATCAAAGTGA
TCTGCTGGCGCGCGAGTTAGCACGCTCACTCAATACTCACTATGACCCTTTGTTGTTTGCACGCCGCCGAGCCACACCCC
ACCAACAAGGGCTCAGCAAAGCGCAGCGAATAAAAAATTTGCGTGATGCATTTACACTAAATCATCCACCAAACCAACAA
CATGTAGCGATTGTGGATGATGTGGTCACTACGGGTAGCACCATTCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

94.406

100

0.944
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment