Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPX95_RS19110 Genome accession   NZ_CP046817
Coordinates   1821788..1822648 (-) Length   286 a.a.
NCBI ID   WP_055031378.1    Uniprot ID   A0A0Q0Z481
Organism   Vibrio metoecus strain 06-2478     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1816788..1827648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS08365 gspL 1817041..1818252 (+) 1212 WP_055031375.1 type II secretion system protein GspL -
  GPX95_RS08370 - 1818262..1818759 (+) 498 WP_000662889.1 type II secretion system protein M -
  GPX95_RS08375 - 1818761..1819519 (+) 759 WP_055031376.1 type II secretion system protein N -
  GPX95_RS08380 cysQ 1819576..1820403 (-) 828 WP_055031377.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPX95_RS08385 nudE 1820426..1820974 (-) 549 WP_055030509.1 ADP compounds hydrolase NudE -
  GPX95_RS08390 nfuA 1821112..1821699 (-) 588 WP_055030508.1 Fe-S biogenesis protein NfuA -
  GPX95_RS19110 comF 1821788..1822648 (-) 861 WP_055031378.1 ComF family protein Machinery gene
  GPX95_RS08400 bioH 1822584..1823345 (+) 762 WP_055031379.1 pimeloyl-ACP methyl ester esterase BioH -
  GPX95_RS08405 - 1823594..1824064 (+) 471 WP_055031380.1 hypothetical protein -
  GPX95_RS08410 - 1824160..1826481 (-) 2322 WP_000030093.1 Tex family protein -
  GPX95_RS08415 greB 1826722..1827204 (+) 483 WP_055031381.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32570.60 Da        Isoelectric Point: 8.4084

>NTDB_id=408334 GPX95_RS19110 WP_055031378.1 1821788..1822648(-) (comF) [Vibrio metoecus strain 06-2478]
MPQPCTNTKSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEANYPDSWLAMLTNWLRKTTAPLLTPECHLCRLTLDKNSP
FGICTACQAWLEHGYRCACCGLPTLTPVEQCGQCLRQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLANLLATK
ISEPAPLLCSVPLHWRRRWQRGFNQSDLLARELARSLNTHYDPLLFARRRATPHQQGLSKAQRIKNLRDAFTLNHPPNQQ
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDNQG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=408334 GPX95_RS19110 WP_055031378.1 1821788..1822648(-) (comF) [Vibrio metoecus strain 06-2478]
ATACCCCAGCCATGCACCAACACCAAATCTTGTCCTTGCCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCAAATTACCCTGATTCTTGGCTCGCTATGTTAACCA
ATTGGCTCAGAAAAACCACCGCACCACTGCTGACTCCGGAATGCCATCTCTGCAGACTGACGCTCGATAAAAATTCGCCG
TTTGGCATCTGCACCGCCTGCCAAGCTTGGCTTGAACACGGTTATCGCTGCGCTTGCTGCGGTTTACCGACTCTTACCCC
AGTCGAACAGTGCGGACAGTGTCTGCGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATATCAGCGCCAGTTTTGGCAAGCGCCACGCTTGGCTAATCTGCTCGCAACAAAA
ATTAGCGAGCCCGCCCCTTTGTTGTGCAGTGTTCCGCTACATTGGCGGCGACGTTGGCAACGCGGTTTCAATCAAAGTGA
TCTGCTGGCGCGCGAGTTAGCACGCTCACTCAATACTCACTATGACCCTTTGTTGTTTGCACGCCGCCGAGCCACACCCC
ACCAACAAGGGCTCAGCAAAGCGCAGCGAATAAAAAATTTGCGTGATGCATTTACACTAAATCATCCACCAAACCAACAA
CATGTAGCGATTGTGGATGATGTGGTCACTACGGGTAGCACCATCCGACATTTATGCGATTTACTGCTTGATGTCGGCGT
ACAAAGCATCGATATTTACTGCATCTGCCGCACTCCCGAGCCGAAAGACAACCAAGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0Z481

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

91.608

100

0.916
  comF Vibrio campbellii strain DS40M4

44.958

83.217

0.374

Multiple sequence alignment