Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPX87_RS05370 Genome accession   NZ_CP046815
Coordinates   1142752..1143477 (+) Length   241 a.a.
NCBI ID   WP_078927153.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1137752..1148477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS05350 - 1138188..1138805 (+) 618 WP_078927149.1 hypothetical protein -
  GPX87_RS05355 - 1138890..1141199 (+) 2310 WP_078927150.1 Tex family protein -
  GPX87_RS05360 - 1141295..1141765 (-) 471 WP_078927151.1 ATP-dependent Lon protease -
  GPX87_RS05365 bioH 1141883..1142665 (-) 783 WP_078927152.1 pimeloyl-ACP methyl ester esterase BioH -
  GPX87_RS05370 comF 1142752..1143477 (+) 726 WP_078927153.1 ComF family protein Machinery gene
  GPX87_RS05375 nfuA 1143553..1144140 (+) 588 WP_078927154.1 Fe-S biogenesis protein NfuA -
  GPX87_RS05380 nudE 1144246..1144809 (+) 564 WP_078927155.1 ADP compounds hydrolase NudE -
  GPX87_RS05385 cysQ 1144818..1145645 (+) 828 WP_078927156.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPX87_RS05390 - 1145674..1146432 (-) 759 WP_078927157.1 type II secretion system protein N -
  GPX87_RS05395 - 1146434..1146928 (-) 495 WP_078927158.1 type II secretion system protein M -
  GPX87_RS05400 gspL 1146925..1148154 (-) 1230 WP_078927159.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27561.94 Da        Isoelectric Point: 8.8059

>NTDB_id=408268 GPX87_RS05370 WP_078927153.1 1142752..1143477(+) (comF) [Vibrio cincinnatiensis strain 1398-82]
MPPYFIASLKKISTWLAPACTLCHLPLDHQAQYGVCSACQSWFSPIQRCPRCGLPSVTATDVCGHCLHSSPPWQRLFCIG
DYQFPLSHTIHQFKYQRQFWQARHLAARLAQQIQHPAPLITSVPLHWRRQWYRGFNQSELLAQGLAKQLGCHFSPTIFAR
RLATPAQQSLTKQQREHNLKAAFQIKQLPEHSHIAIVDDVVTTGSTMRQLCYLLLEVGIERIDIYCLCRTPEPSDPLIPR
S

Nucleotide


Download         Length: 726 bp        

>NTDB_id=408268 GPX87_RS05370 WP_078927153.1 1142752..1143477(+) (comF) [Vibrio cincinnatiensis strain 1398-82]
ATGCCCCCTTATTTTATCGCTTCTCTTAAGAAAATAAGCACTTGGTTAGCTCCAGCCTGTACTTTATGTCACCTTCCTTT
AGATCATCAAGCGCAATATGGTGTCTGCTCCGCTTGCCAATCTTGGTTTTCTCCCATACAGCGCTGCCCACGCTGTGGAC
TTCCCAGTGTAACCGCCACTGATGTATGCGGCCACTGTTTACACTCTTCCCCTCCTTGGCAGCGTCTCTTTTGCATTGGT
GACTATCAATTTCCGCTCAGCCACACCATTCACCAATTCAAATATCAACGCCAATTCTGGCAAGCACGTCACCTCGCCGC
CCGCCTTGCTCAGCAAATACAACACCCCGCCCCTTTAATCACCTCTGTTCCGCTTCACTGGCGCCGCCAATGGTACAGAG
GCTTTAATCAAAGTGAGTTATTAGCGCAAGGATTAGCAAAGCAACTCGGCTGTCATTTTTCCCCAACGATCTTTGCGCGC
CGGTTAGCAACACCCGCCCAACAATCATTGACCAAGCAACAACGAGAACATAATTTAAAAGCCGCATTTCAGATTAAACA
GCTTCCTGAACATTCACATATTGCGATTGTCGATGATGTAGTCACCACAGGCAGTACCATGCGACAATTATGCTATTTAC
TACTTGAAGTCGGCATCGAAAGGATTGATATTTACTGTCTATGCCGCACTCCTGAGCCGAGCGATCCCTTAATACCTCGA
TCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.177

93.776

0.564
  comF Vibrio campbellii strain DS40M4

46.903

93.776

0.44

Multiple sequence alignment