Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY28_RS11590 Genome accession   NZ_CP046814
Coordinates   511617..512342 (-) Length   241 a.a.
NCBI ID   WP_033905914.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2010V-1102     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 506617..517342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY28_RS11565 - 507759..508250 (+) 492 WP_005383002.1 type II secretion system protein M -
  GPY28_RS11570 - 508252..509013 (+) 762 WP_062730773.1 type II secretion system protein N -
  GPY28_RS11575 cysQ 509317..510144 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY28_RS11580 nudE 510189..510758 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  GPY28_RS11585 nfuA 510935..511519 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  GPY28_RS11590 comF 511617..512342 (-) 726 WP_033905914.1 amidophosphoribosyltransferase Machinery gene
  GPY28_RS11595 bioH 512427..513194 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY28_RS11600 - 513319..513783 (+) 465 WP_005379316.1 hypothetical protein -
  GPY28_RS11605 - 513888..516209 (-) 2322 WP_158159537.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27823.08 Da        Isoelectric Point: 9.7698

>NTDB_id=408216 GPY28_RS11590 WP_033905914.1 511617..512342(-) (comF) [Vibrio alginolyticus strain 2010V-1102]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=408216 GPY28_RS11590 WP_033905914.1 511617..512342(-) (comF) [Vibrio alginolyticus strain 2010V-1102]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.954

100

0.71
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment