Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY15_RS12440 Genome accession   NZ_CP046810
Coordinates   2696670..2697350 (+) Length   226 a.a.
NCBI ID   WP_223173093.1    Uniprot ID   -
Organism   Grimontia hollisae strain 1078-81     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2691670..2702350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY15_RS12415 greB 2691929..2692414 (+) 486 WP_005501634.1 transcription elongation factor GreB -
  GPY15_RS12420 - 2692453..2694780 (+) 2328 WP_158162027.1 Tex family protein -
  GPY15_RS12425 - 2694847..2695344 (-) 498 WP_114996277.1 ATP-dependent Lon protease -
  GPY15_RS12430 - 2695420..2695749 (-) 330 WP_005501637.1 hypothetical protein -
  GPY15_RS12435 bioH 2695848..2696630 (-) 783 WP_158162029.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY15_RS12440 comF 2696670..2697350 (+) 681 WP_223173093.1 ComF family protein Machinery gene
  GPY15_RS12445 nfuA 2697458..2698042 (+) 585 WP_005501641.1 Fe-S biogenesis protein NfuA -
  GPY15_RS12450 dinF 2698105..2699445 (-) 1341 WP_158162031.1 MATE family efflux transporter DinF -
  GPY15_RS12455 cyoE 2699525..2700442 (-) 918 WP_114996280.1 heme o synthase -
  GPY15_RS12460 - 2700435..2701493 (-) 1059 WP_005501650.1 COX15/CtaA family protein -
  GPY15_RS12465 - 2701503..2702030 (-) 528 WP_005501652.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25573.01 Da        Isoelectric Point: 9.5522

>NTDB_id=408196 GPY15_RS12440 WP_223173093.1 2696670..2697350(+) (comF) [Grimontia hollisae strain 1078-81]
MLNIILRALPLRCQLCQHPLGQSRHPWCETCHASLPRHPRCLQCGLPTPYVIESCGHCLKKPPLWDGLICVGTYTFPYDK
LLHRFKYQGHYWLAPALATLLATEIEEPAPLLLPVPMHWRRRISRGFNHSGVLARELAKVLETQYAPNVLKRTRATRQQQ
GLNRQSRLSNLKSAFSVNGKLPPHVALVDDVVTTGATIAQICSLLRRHGVERIDVYCLCRTPPDAI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=408196 GPY15_RS12440 WP_223173093.1 2696670..2697350(+) (comF) [Grimontia hollisae strain 1078-81]
ATGTTGAACATTATCTTACGTGCCTTGCCCCTGCGCTGTCAGCTTTGCCAGCATCCTCTTGGGCAATCCAGACACCCCTG
GTGCGAAACGTGTCACGCCAGCTTGCCTCGCCACCCCCGCTGCCTTCAGTGTGGGCTGCCTACCCCCTACGTGATCGAAA
GTTGCGGGCACTGCCTGAAAAAGCCGCCGCTCTGGGACGGGTTAATCTGTGTCGGCACTTATACCTTCCCTTATGACAAA
CTGCTGCACCGGTTCAAATATCAGGGACACTACTGGCTGGCACCTGCACTTGCCACCTTACTGGCAACAGAAATCGAGGA
GCCAGCCCCTTTACTGTTACCCGTCCCTATGCACTGGCGACGCCGTATCTCACGCGGATTCAACCACAGTGGCGTGTTAG
CCCGCGAGCTTGCAAAGGTTCTGGAGACCCAATATGCGCCCAACGTCTTAAAACGCACCCGTGCCACTCGCCAACAGCAG
GGATTAAACCGACAATCACGCCTTTCCAACCTGAAAAGTGCGTTTTCCGTCAACGGGAAACTACCACCACATGTCGCGCT
GGTCGATGATGTGGTGACCACAGGCGCGACCATCGCCCAGATTTGCAGCTTGCTCAGGCGACATGGTGTGGAACGCATTG
ATGTGTATTGTCTTTGCCGTACCCCGCCCGATGCCATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(132-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.113

94.248

0.491
  comF Vibrio campbellii strain DS40M4

43.668

100

0.442

Multiple sequence alignment