Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H0N28_RS00280 Genome accession   NZ_CP059041
Coordinates   60787..62052 (+) Length   421 a.a.
NCBI ID   WP_001285406.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55787..67052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N28_RS00250 (H0N28_00250) mutY 55956..56990 (-) 1035 WP_001113875.1 A/G-specific adenine glycosylase -
  H0N28_RS00255 (H0N28_00255) - 57131..57493 (-) 363 WP_000130110.1 HIT family protein -
  H0N28_RS00260 (H0N28_00260) - 57679..58416 (-) 738 WP_000100767.1 dienelactone hydrolase family protein -
  H0N28_RS00265 (H0N28_00265) - 58588..58746 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  H0N28_RS00270 (H0N28_00270) - 58941..59399 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  H0N28_RS00275 (H0N28_00275) - 59509..60681 (+) 1173 WP_000986272.1 PQQ-dependent sugar dehydrogenase -
  H0N28_RS00280 (H0N28_00280) rarA 60787..62052 (+) 1266 WP_001285406.1 replication-associated recombination protein A Machinery gene
  H0N28_RS00285 (H0N28_00285) - 62068..62907 (-) 840 WP_000349490.1 formate/nitrite transporter family protein -
  H0N28_RS00290 (H0N28_00290) - 63193..63396 (-) 204 WP_000418560.1 hypothetical protein -
  H0N28_RS00295 (H0N28_00295) purC 63589..64308 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  H0N28_RS00300 (H0N28_00300) - 64345..64947 (-) 603 WP_001177091.1 hypothetical protein -
  H0N28_RS00305 (H0N28_00305) dapA 64963..65856 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  H0N28_RS00310 (H0N28_00310) pncA 66186..66830 (+) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46945.60 Da        Isoelectric Point: 5.8354

>NTDB_id=408154 H0N28_RS00280 WP_001285406.1 60787..62052(+) (rarA) [Acinetobacter baumannii strain ATCC 17978]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=408154 H0N28_RS00280 WP_001285406.1 60787..62052(+) (rarA) [Acinetobacter baumannii strain ATCC 17978]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATCATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375