Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY47_RS19580 Genome accession   NZ_CP046806
Coordinates   2416196..2416921 (-) Length   241 a.a.
NCBI ID   WP_158157104.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2439-01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2411196..2421921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY47_RS19555 - 2412339..2412830 (+) 492 WP_005383002.1 type II secretion system protein M -
  GPY47_RS19560 - 2412832..2413593 (+) 762 WP_158157102.1 type II secretion system protein N -
  GPY47_RS19565 cysQ 2413896..2414723 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY47_RS19570 nudE 2414768..2415337 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  GPY47_RS19575 nfuA 2415514..2416098 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  GPY47_RS19580 comF 2416196..2416921 (-) 726 WP_158157104.1 ComF family protein Machinery gene
  GPY47_RS19585 bioH 2417006..2417773 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY47_RS19590 - 2417898..2418362 (+) 465 WP_005379316.1 hypothetical protein -
  GPY47_RS19595 - 2418467..2420788 (-) 2322 WP_158157106.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27765.04 Da        Isoelectric Point: 9.7558

>NTDB_id=408115 GPY47_RS19580 WP_158157104.1 2416196..2416921(-) (comF) [Vibrio alginolyticus strain 2439-01]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQANFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=408115 GPY47_RS19580 WP_158157104.1 2416196..2416921(-) (comF) [Vibrio alginolyticus strain 2439-01]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGCTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTACAGGCCAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473

Multiple sequence alignment