Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPX92_RS09705 Genome accession   NZ_CP046802
Coordinates   1151972..1152697 (-) Length   241 a.a.
NCBI ID   WP_078927153.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1146972..1157697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS09675 gspL 1147295..1148524 (+) 1230 WP_078927159.1 type II secretion system protein GspL -
  GPX92_RS09680 - 1148521..1149015 (+) 495 WP_078927158.1 type II secretion system protein M -
  GPX92_RS09685 - 1149017..1149775 (+) 759 WP_158117071.1 type II secretion system protein N -
  GPX92_RS09690 cysQ 1149804..1150631 (-) 828 WP_078927156.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPX92_RS09695 nudE 1150640..1151203 (-) 564 WP_158117072.1 ADP compounds hydrolase NudE -
  GPX92_RS09700 nfuA 1151309..1151896 (-) 588 WP_078927154.1 Fe-S biogenesis protein NfuA -
  GPX92_RS09705 comF 1151972..1152697 (-) 726 WP_078927153.1 ComF family protein Machinery gene
  GPX92_RS09710 bioH 1152784..1153566 (+) 783 WP_078927152.1 pimeloyl-ACP methyl ester esterase BioH -
  GPX92_RS09715 - 1153684..1154154 (+) 471 WP_078927151.1 ATP-dependent Lon protease -
  GPX92_RS09720 - 1154250..1156559 (-) 2310 WP_158117073.1 Tex family protein -
  GPX92_RS09725 - 1156644..1157261 (-) 618 WP_158117074.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27561.94 Da        Isoelectric Point: 8.8059

>NTDB_id=408054 GPX92_RS09705 WP_078927153.1 1151972..1152697(-) (comF) [Vibrio cincinnatiensis strain 2070-81]
MPPYFIASLKKISTWLAPACTLCHLPLDHQAQYGVCSACQSWFSPIQRCPRCGLPSVTATDVCGHCLHSSPPWQRLFCIG
DYQFPLSHTIHQFKYQRQFWQARHLAARLAQQIQHPAPLITSVPLHWRRQWYRGFNQSELLAQGLAKQLGCHFSPTIFAR
RLATPAQQSLTKQQREHNLKAAFQIKQLPEHSHIAIVDDVVTTGSTMRQLCYLLLEVGIERIDIYCLCRTPEPSDPLIPR
S

Nucleotide


Download         Length: 726 bp        

>NTDB_id=408054 GPX92_RS09705 WP_078927153.1 1151972..1152697(-) (comF) [Vibrio cincinnatiensis strain 2070-81]
ATGCCCCCTTATTTTATCGCTTCTCTTAAGAAAATAAGCACTTGGTTAGCTCCAGCCTGTACTTTATGTCACCTTCCTTT
AGATCATCAAGCGCAATATGGTGTCTGCTCCGCTTGCCAATCTTGGTTTTCTCCCATACAGCGCTGCCCACGCTGTGGAC
TTCCCAGTGTAACCGCCACTGATGTATGCGGCCACTGTTTACACTCTTCCCCTCCTTGGCAGCGTCTCTTTTGCATTGGT
GACTATCAATTTCCGCTCAGCCACACCATTCACCAATTCAAATATCAACGCCAATTCTGGCAAGCACGTCACCTCGCCGC
CCGCCTTGCTCAGCAAATACAACACCCCGCCCCTTTAATCACCTCTGTTCCGCTTCACTGGCGCCGCCAATGGTACAGAG
GCTTTAATCAAAGTGAGTTATTAGCGCAAGGATTAGCAAAGCAACTCGGCTGTCATTTTTCCCCAACGATCTTTGCGCGC
CGGTTAGCAACACCCGCCCAACAATCATTGACCAAGCAACAACGAGAACATAATTTAAAAGCCGCATTTCAGATTAAACA
GCTTCCTGAACATTCACATATTGCGATTGTCGATGATGTAGTCACCACAGGCAGTACCATGCGACAATTATGCTATTTAC
TACTTGAAGTCGGCATCGAAAGGATTGATATTTACTGTCTATGCCGCACTCCTGAGCCGAGCGATCCCTTAATACCTCGA
TCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.177

93.776

0.564
  comF Vibrio campbellii strain DS40M4

46.903

93.776

0.44

Multiple sequence alignment