Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H0N27_RS00285 Genome accession   NZ_CP059039
Coordinates   60928..62193 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain A118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55928..67193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N27_RS00255 (H0N27_00255) mutY 56097..57131 (-) 1035 WP_049068548.1 A/G-specific adenine glycosylase -
  H0N27_RS00260 (H0N27_00260) - 57272..57634 (-) 363 WP_000130110.1 HIT family protein -
  H0N27_RS00265 (H0N27_00265) - 57820..58557 (-) 738 WP_000100768.1 dienelactone hydrolase family protein -
  H0N27_RS00270 (H0N27_00270) - 58729..58887 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  H0N27_RS00275 (H0N27_00275) - 59082..59540 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  H0N27_RS00280 (H0N27_00280) - 59650..60822 (+) 1173 WP_171945432.1 PQQ-dependent sugar dehydrogenase -
  H0N27_RS00285 (H0N27_00285) rarA 60928..62193 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  H0N27_RS00290 (H0N27_00290) - 62209..63048 (-) 840 WP_031965447.1 formate/nitrite transporter family protein -
  H0N27_RS00295 (H0N27_00295) - 63334..63537 (-) 204 WP_000418560.1 hypothetical protein -
  H0N27_RS00300 (H0N27_00300) purC 63730..64449 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  H0N27_RS00305 (H0N27_00305) - 64487..65086 (-) 600 WP_168726715.1 lipoprotein-34 precursor (NlpB) -
  H0N27_RS00310 (H0N27_00310) dapA 65102..65995 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  H0N27_RS00315 (H0N27_00315) pncA 66325..66969 (+) 645 WP_025466234.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=408013 H0N27_RS00285 WP_001285409.1 60928..62193(+) (rarA) [Acinetobacter baumannii strain A118]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=408013 H0N27_RS00285 WP_001285409.1 60928..62193(+) (rarA) [Acinetobacter baumannii strain A118]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTAAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387