Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H0E72_RS21745 Genome accession   NZ_CP059003
Coordinates   4512987..4513751 (+) Length   254 a.a.
NCBI ID   WP_001136211.1    Uniprot ID   -
Organism   Escherichia coli strain 2D     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4507987..4518751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0E72_RS21725 (H0E72_21725) acpT 4508941..4509528 (+) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -
  H0E72_RS21730 (H0E72_21730) nikA 4509639..4511213 (+) 1575 WP_000493128.1 nickel ABC transporter substrate-binding protein -
  H0E72_RS21735 (H0E72_21735) nikB 4511213..4512157 (+) 945 WP_000947080.1 nickel ABC transporter permease subunit NikB -
  H0E72_RS21740 (H0E72_21740) nikC 4512154..4512987 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  H0E72_RS21745 (H0E72_21745) amiE 4512987..4513751 (+) 765 WP_001136211.1 nickel import ATP-binding protein NikD Regulator
  H0E72_RS21750 (H0E72_21750) nikE 4513748..4514554 (+) 807 WP_000173687.1 nickel import ATP-binding protein NikE -
  H0E72_RS21755 (H0E72_21755) nikR 4514560..4514961 (+) 402 WP_001189000.1 nickel-responsive transcriptional regulator NikR -
  H0E72_RS21760 (H0E72_21760) - 4515160..4515906 (+) 747 WP_001329803.1 GntR family transcriptional regulator -
  H0E72_RS21765 (H0E72_21765) - 4515931..4516404 (+) 474 WP_012311717.1 PTS sugar transporter subunit IIA -
  H0E72_RS21770 (H0E72_21770) - 4516401..4516682 (+) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  H0E72_RS21775 (H0E72_21775) - 4516756..4518114 (+) 1359 WP_001302220.1 PTS galactitol transporter subunit IIC -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.45 Da        Isoelectric Point: 6.9016

>NTDB_id=407997 H0E72_RS21745 WP_001136211.1 4512987..4513751(+) (amiE) [Escherichia coli strain 2D]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=407997 H0E72_RS21745 WP_001136211.1 4512987..4513751(+) (amiE) [Escherichia coli strain 2D]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTTCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTTGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATTCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398