Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY43_RS10985 Genome accession   NZ_CP046797
Coordinates   2377679..2378380 (+) Length   233 a.a.
NCBI ID   WP_158107829.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2013V-1001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2372679..2383380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY43_RS10965 - 2373113..2373775 (+) 663 WP_004728474.1 hypothetical protein -
  GPY43_RS10970 - 2373831..2376140 (+) 2310 WP_158107828.1 Tex family protein -
  GPY43_RS10975 - 2376223..2376693 (-) 471 WP_004728470.1 hypothetical protein -
  GPY43_RS10980 bioH 2376822..2377592 (-) 771 WP_158108194.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY43_RS10985 comF 2377679..2378380 (+) 702 WP_158107829.1 phosphoribosyltransferase family protein Machinery gene
  GPY43_RS10990 nfuA 2378481..2379068 (+) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  GPY43_RS10995 nudE 2379214..2379762 (+) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  GPY43_RS11000 cysQ 2379786..2380613 (+) 828 WP_004728460.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY43_RS11005 - 2380674..2381432 (-) 759 WP_158107830.1 type II secretion system protein N -
  GPY43_RS11010 - 2381429..2381938 (-) 510 WP_004728457.1 type II secretion system protein GspM -
  GPY43_RS11015 gspL 2381948..2383159 (-) 1212 WP_158107831.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26294.53 Da        Isoelectric Point: 8.7783

>NTDB_id=407959 GPY43_RS10985 WP_158107829.1 2377679..2378380(+) (comF) [Vibrio furnissii strain 2013V-1001]
MLTNRFQKTMFSWLAPACQLCGLALHAPTKPWLCAACLAWYAPTPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDY
RFPLSHSVHQLKYQRQFWQARPLAALLAPRITTPAPLLTCVPLHWRRQLRRGFNQSDVLARQLAQHLGSEYDPQLFSRPH
ATEPQHGLDKAQRRRNLNRAFVLNHVPCQQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=407959 GPY43_RS10985 WP_158107829.1 2377679..2378380(+) (comF) [Vibrio furnissii strain 2013V-1001]
ATGTTAACCAATCGCTTTCAAAAAACCATGTTTTCCTGGCTGGCGCCCGCCTGCCAACTGTGCGGCTTAGCGCTACACGC
GCCGACCAAACCCTGGCTGTGTGCGGCATGTCTAGCGTGGTATGCCCCCACACCGCGCTGCGCTCGCTGCGGCCTGCCGT
GCGAAAGTGCCACCGCGCAGTGCGGCCAGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGTGTGGGTGATTAC
CGCTTTCCTCTCAGCCACAGCGTGCATCAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCACGTCCCCTGGCTGCATTGCT
CGCGCCCAGAATCACCACGCCTGCGCCGCTGCTCACGTGCGTACCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCA
ACCAAAGTGATGTGTTGGCACGTCAGCTCGCCCAGCATTTGGGCAGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCAC
GCCACGGAACCACAACACGGCTTGGACAAAGCGCAGCGGCGACGCAACCTCAACCGTGCCTTTGTGTTAAACCACGTGCC
GTGCCAGCAACACGTGGCGATTGTCGACGATGTCGTCACCACCGGCAGTACCGTACGGCAATTATGCAATTTACTACTTG
AAGTGGGCGTCAAAAGCCTCGATATTTACTGTATCTGCCGCACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(183-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

65.665

100

0.657
  comF Vibrio campbellii strain DS40M4

48.536

100

0.498

Multiple sequence alignment