Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY38_RS14700 Genome accession   NZ_CP046795
Coordinates   3156912..3157613 (-) Length   233 a.a.
NCBI ID   WP_158141346.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2420-04     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3151912..3162613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS14670 gspL 3152133..3153344 (+) 1212 WP_158141342.1 type II secretion system protein GspL -
  GPY38_RS14675 - 3153354..3153863 (+) 510 WP_158141343.1 type II secretion system protein M -
  GPY38_RS14680 - 3153860..3154618 (+) 759 WP_158141344.1 type II secretion system protein N -
  GPY38_RS14685 cysQ 3154679..3155506 (-) 828 WP_158141345.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY38_RS14690 nudE 3155530..3156078 (-) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  GPY38_RS14695 nfuA 3156224..3156811 (-) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  GPY38_RS14700 comF 3156912..3157613 (-) 702 WP_158141346.1 phosphoribosyltransferase family protein Machinery gene
  GPY38_RS14705 bioH 3157700..3158470 (+) 771 WP_158141460.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY38_RS14710 - 3158599..3159069 (+) 471 WP_004728470.1 hypothetical protein -
  GPY38_RS14715 - 3159152..3161461 (-) 2310 WP_158141347.1 Tex family protein -
  GPY38_RS14720 - 3161517..3162179 (-) 663 WP_004728474.1 hypothetical protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26361.67 Da        Isoelectric Point: 9.0291

>NTDB_id=407922 GPY38_RS14700 WP_158141346.1 3156912..3157613(-) (comF) [Vibrio furnissii strain 2420-04]
MLTNRFQKTMFSWLAPACQLCGLALHAPTKPRLCAACLAWYAPTPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDY
RFPLRHSVHQLKYQRQFWQARPLAALLAPRITTPAPLLTCVPLHWRRQLRRGFNQSDVLARQLAQHLGSEYDPQLFSRPH
ATVPQHGLDKVQRRRNLNRAFVLNHEPCQQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=407922 GPY38_RS14700 WP_158141346.1 3156912..3157613(-) (comF) [Vibrio furnissii strain 2420-04]
ATGTTAACCAATCGCTTTCAAAAAACCATGTTTTCCTGGCTGGCGCCCGCCTGCCAACTGTGCGGCTTAGCGCTACACGC
GCCGACCAAACCCAGGCTGTGTGCGGCATGTCTAGCGTGGTATGCCCCCACACCGCGCTGCGCTCGCTGCGGCCTGCCGT
GCGAAAGTGCCACCGCGCAGTGCGGCCAGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGTGTGGGCGATTAC
CGCTTTCCTCTCCGCCACAGCGTGCATCAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCGCGGCCCCTGGCTGCATTGCT
CGCGCCCAGAATCACCACGCCTGCACCGCTTCTCACGTGCGTGCCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCA
ATCAAAGTGATGTGTTGGCACGTCAGCTCGCCCAGCATTTGGGCAGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCAC
GCCACGGTGCCACAACACGGCTTGGACAAAGTGCAGCGGCGACGCAACCTCAACCGTGCCTTTGTGTTAAACCACGAGCC
GTGCCAGCAACACGTAGCGATTGTCGACGATGTCGTCACCACTGGCAGCACCGTACGGCAATTATGCAATTTACTACTTG
AAGTGGGCGTCAAAAGCCTCGATATTTACTGTATCTGCCGCACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.807

100

0.648
  comF Vibrio campbellii strain DS40M4

48.117

100

0.494

Multiple sequence alignment