Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPX86_RS09060 Genome accession   NZ_CP046793
Coordinates   2032093..2032812 (-) Length   239 a.a.
NCBI ID   WP_158144605.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 9502-00     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2027093..2037812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS09030 gspL 2027300..2028526 (+) 1227 WP_199244778.1 type II secretion system protein GspL -
  GPX86_RS09035 - 2028526..2029020 (+) 495 WP_040903895.1 type II secretion system protein M -
  GPX86_RS09040 - 2029022..2029780 (+) 759 WP_158144603.1 type II secretion system protein N -
  GPX86_RS09045 cysQ 2029831..2030658 (-) 828 WP_158144604.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPX86_RS09050 nudE 2030667..2031227 (-) 561 WP_154169909.1 ADP compounds hydrolase NudE -
  GPX86_RS09055 nfuA 2031418..2032008 (-) 591 WP_050782704.1 Fe-S biogenesis protein NfuA -
  GPX86_RS09060 comF 2032093..2032812 (-) 720 WP_158144605.1 ComF family protein Machinery gene
  GPX86_RS09065 bioH 2032905..2033681 (+) 777 WP_158144999.1 pimeloyl-ACP methyl ester esterase BioH -
  GPX86_RS09070 - 2033803..2034273 (+) 471 WP_158137473.1 ATP-dependent Lon protease -
  GPX86_RS09075 - 2034568..2036889 (-) 2322 WP_158144606.1 Tex family protein -
  GPX86_RS09080 greB 2037124..2037600 (+) 477 WP_154169919.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27508.75 Da        Isoelectric Point: 8.6720

>NTDB_id=407874 GPX86_RS09060 WP_158144605.1 2032093..2032812(-) (comF) [Vibrio metschnikovii strain 9502-00]
MSMWRDRISTITHAWLTPTCSLCHLPLEPQAQHGTCHACQAWYAPSLRCQRCGLPCLTITPQCGQCLRSPPPWQRLFCIG
DYRFPLSHTIHQLKYQRQFWQARHLAARLAECITEPAPLITCVPLHWRRQWQRGFNQSERLARPLAKHVGSQFDPHLFTR
TRSTPAQQQLTKSQREKNLSGAFQRLSIPHVNHVAIVDDVVTTGSTIRQLCDLLLEVGIERIDIYCLCRTPEPSDAFQP

Nucleotide


Download         Length: 720 bp        

>NTDB_id=407874 GPX86_RS09060 WP_158144605.1 2032093..2032812(-) (comF) [Vibrio metschnikovii strain 9502-00]
ATGTCAATGTGGCGAGATCGGATATCGACTATCACCCACGCTTGGCTCACGCCAACCTGCAGCTTATGCCACCTGCCTTT
AGAGCCTCAAGCGCAGCATGGTACTTGCCACGCCTGCCAAGCTTGGTATGCTCCCAGCCTTCGTTGCCAGCGCTGTGGTT
TACCTTGCCTAACCATCACTCCCCAATGTGGTCAATGCTTACGTTCCCCTCCCCCTTGGCAACGGCTGTTTTGCATCGGC
GACTACCGATTCCCATTGAGTCACACCATTCATCAACTTAAATATCAGCGTCAGTTTTGGCAAGCGCGTCATTTAGCCGC
TCGACTCGCTGAATGCATCACTGAGCCAGCTCCGCTGATCACTTGCGTCCCATTACACTGGCGCAGACAATGGCAAAGAG
GGTTTAATCAAAGCGAGCGTCTTGCTCGCCCCCTTGCCAAGCACGTAGGTAGCCAGTTTGACCCACATCTGTTTACCCGC
ACTCGATCCACTCCCGCTCAACAACAATTAACCAAATCACAGCGTGAGAAAAATTTATCTGGTGCATTTCAACGTCTATC
GATTCCACACGTTAACCATGTCGCTATCGTCGACGATGTGGTCACTACCGGTAGCACTATCCGACAATTATGTGATTTAC
TGCTTGAAGTTGGCATCGAAAGGATTGATATTTATTGCTTATGCCGCACTCCTGAGCCGAGCGATGCATTCCAGCCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.169

98.745

0.594
  comF Vibrio campbellii strain DS40M4

46.781

97.49

0.456

Multiple sequence alignment