Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY30_RS01275 Genome accession   NZ_CP046791
Coordinates   267853..268551 (-) Length   232 a.a.
NCBI ID   WP_158132936.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2462-79     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 262853..273551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS01245 gspL 263044..264243 (+) 1200 WP_158132934.1 type II secretion system protein GspL -
  GPY30_RS01250 - 264251..264742 (+) 492 WP_039422655.1 type II secretion system protein M -
  GPY30_RS01255 - 264744..265505 (+) 762 WP_158132935.1 type II secretion system protein N -
  GPY30_RS01260 cysQ 265584..266411 (-) 828 WP_039422658.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY30_RS01265 nudE 266426..266979 (-) 554 Protein_229 ADP compounds hydrolase NudE -
  GPY30_RS01270 nfuA 267135..267718 (-) 584 Protein_230 Fe-S biogenesis protein NfuA -
  GPY30_RS01275 comF 267853..268551 (-) 699 WP_158132936.1 phosphoribosyltransferase family protein Machinery gene
  GPY30_RS01280 bioH 268641..269408 (+) 768 WP_158132937.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY30_RS01285 - 269549..270016 (+) 468 WP_158132938.1 ATP-dependent Lon protease -
  GPY30_RS01290 - 270096..272417 (-) 2322 WP_158134816.1 Tex family protein -
  GPY30_RS01295 greB 272652..273128 (+) 477 WP_158132939.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26668.96 Da        Isoelectric Point: 9.2928

>NTDB_id=407811 GPY30_RS01275 WP_158132936.1 267853..268551(-) (comF) [Vibrio navarrensis strain 2462-79]
MLTHWLREKTLRSLPRLCHLCGLPCSSASTSLWCDHCLGYFSPTPRCRHCGLPTLSNVAECGQCLRTPPVWRRLYCLSDY
QFPTAWYVNQIKHQRQFRFCQPVAALLAERIQDPAPLLLSVPMHWRRQWRRGFNQSDLFAAQLAHALGQHYLPDAFRRTT
HTPPQQGLNKQQRQRNLAGAFRLNRLIEAKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCICRTPEPK

Nucleotide


Download         Length: 699 bp        

>NTDB_id=407811 GPY30_RS01275 WP_158132936.1 267853..268551(-) (comF) [Vibrio navarrensis strain 2462-79]
ATGTTAACTCATTGGCTGCGTGAAAAAACACTCCGATCACTGCCTAGGCTGTGTCACCTGTGCGGCTTACCCTGTTCATC
TGCCAGCACCTCTCTTTGGTGTGACCATTGCCTTGGCTATTTTTCGCCTACGCCTCGTTGTCGCCACTGTGGTTTGCCCA
CTTTAAGTAACGTCGCCGAATGCGGCCAATGCCTGCGCACCCCGCCCGTTTGGCGACGCTTGTATTGCCTGAGCGACTAC
CAATTTCCTACCGCTTGGTATGTCAATCAGATCAAACACCAGCGCCAATTTCGTTTCTGCCAACCCGTTGCCGCGCTCCT
TGCCGAGCGCATTCAAGACCCCGCCCCACTGCTGCTCTCTGTCCCCATGCACTGGCGTCGACAGTGGCGACGTGGCTTTA
ACCAGAGCGACCTTTTCGCCGCACAGTTGGCCCACGCCCTTGGGCAGCACTATCTGCCCGACGCCTTTCGTCGCACCACT
CACACGCCGCCACAACAAGGGCTCAACAAACAGCAGAGGCAGCGCAATCTCGCGGGCGCTTTTCGCTTAAATCGGCTAAT
TGAGGCCAAACACGTGGCGATTGTTGACGACGTCGTCACGACCGGCAGCACAGTGCGACAATTATGCCAATTACTGCTTG
CAGTCGGGGTGGAAAGCATTGATATTTATTGCATCTGCCGCACTCCTGAGCCGAAGTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

57.328

100

0.573
  comF Vibrio campbellii strain DS40M4

48.319

100

0.496

Multiple sequence alignment