Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY29_RS02585 Genome accession   NZ_CP046787
Coordinates   497518..498243 (-) Length   241 a.a.
NCBI ID   WP_031781654.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 492518..503243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS02560 - 493637..494128 (+) 492 WP_005458943.1 type II secretion system protein M -
  GPY29_RS02565 - 494130..494891 (+) 762 WP_029838295.1 type II secretion system protein N -
  GPY29_RS02570 cysQ 495177..496004 (-) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY29_RS02575 nudE 496046..496615 (-) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  GPY29_RS02580 nfuA 496836..497420 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GPY29_RS02585 comF 497518..498243 (-) 726 WP_031781654.1 amidophosphoribosyltransferase Machinery gene
  GPY29_RS02590 bioH 498328..499095 (+) 768 WP_025535414.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY29_RS02595 - 499219..499683 (+) 465 WP_005459035.1 hypothetical protein -
  GPY29_RS02600 - 499817..502138 (-) 2322 WP_029838292.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27614.76 Da        Isoelectric Point: 9.0110

>NTDB_id=407766 GPY29_RS02585 WP_031781654.1 497518..498243(-) (comF) [Vibrio parahaemolyticus strain 2013V-1174]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=407766 GPY29_RS02585 WP_031781654.1 497518..498243(-) (comF) [Vibrio parahaemolyticus strain 2013V-1174]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment