Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY45_RS04240 Genome accession   NZ_CP046785
Coordinates   837520..838245 (+) Length   241 a.a.
NCBI ID   WP_020839937.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1136     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 832520..843245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY45_RS04225 - 833625..835946 (+) 2322 WP_025632769.1 Tex family protein -
  GPY45_RS04230 - 836080..836544 (-) 465 WP_005459035.1 hypothetical protein -
  GPY45_RS04235 bioH 836668..837435 (-) 768 WP_021486851.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY45_RS04240 comF 837520..838245 (+) 726 WP_020839937.1 amidophosphoribosyltransferase Machinery gene
  GPY45_RS04245 nfuA 838343..838927 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GPY45_RS04250 nudE 839148..839717 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  GPY45_RS04255 cysQ 839759..840586 (+) 828 WP_069496009.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY45_RS04260 - 840872..841633 (-) 762 WP_089202836.1 type II secretion system protein N -
  GPY45_RS04265 - 841635..842126 (-) 492 WP_069496012.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27659.76 Da        Isoelectric Point: 9.0110

>NTDB_id=407722 GPY45_RS04240 WP_020839937.1 837520..838245(+) (comF) [Vibrio parahaemolyticus strain 2013V-1136]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=407722 GPY45_RS04240 WP_020839937.1 837520..838245(+) (comF) [Vibrio parahaemolyticus strain 2013V-1136]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTATGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGAGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment