Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY39_RS15155 Genome accession   NZ_CP046783
Coordinates   2982223..2982948 (-) Length   241 a.a.
NCBI ID   WP_021448951.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2977223..2987948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS15130 - 2978342..2978833 (+) 492 WP_005458943.1 type II secretion system protein M -
  GPY39_RS15135 - 2978835..2979596 (+) 762 WP_021486905.1 type II secretion system protein N -
  GPY39_RS15140 cysQ 2979882..2980709 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY39_RS15145 nudE 2980751..2981320 (-) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  GPY39_RS15150 nfuA 2981541..2982125 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GPY39_RS15155 comF 2982223..2982948 (-) 726 WP_021448951.1 phosphoribosyltransferase family protein Machinery gene
  GPY39_RS15160 bioH 2983033..2983800 (+) 768 WP_021448994.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY39_RS15165 - 2983924..2984388 (+) 465 WP_005459035.1 hypothetical protein -
  GPY39_RS15170 - 2984524..2986845 (-) 2322 WP_021449011.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27720.89 Da        Isoelectric Point: 8.9991

>NTDB_id=407708 GPY39_RS15155 WP_021448951.1 2982223..2982948(-) (comF) [Vibrio parahaemolyticus strain 2013V-1181]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=407708 GPY39_RS15155 WP_021448951.1 2982223..2982948(-) (comF) [Vibrio parahaemolyticus strain 2013V-1181]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCACAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
CTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGAGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment