Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPY17_RS23345 Genome accession   NZ_CP046782
Coordinates   3008930..3009445 (-) Length   171 a.a.
NCBI ID   WP_015297395.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1244     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3003930..3014445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY17_RS23330 aroB 3005311..3006411 (-) 1101 WP_069545880.1 3-dehydroquinate synthase -
  GPY17_RS23335 aroK 3006443..3006961 (-) 519 WP_005381319.1 shikimate kinase AroK -
  GPY17_RS23340 pilQ 3007150..3008898 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  GPY17_RS23345 pilP 3008930..3009445 (-) 516 WP_015297395.1 pilus assembly protein PilP Machinery gene
  GPY17_RS23350 pilO 3009435..3010028 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY17_RS23355 pilN 3010021..3010599 (-) 579 WP_005480484.1 PilN domain-containing protein Machinery gene
  GPY17_RS23360 pilM 3010583..3011599 (-) 1017 WP_017449463.1 type IV pilus assembly protein PilM Machinery gene
  GPY17_RS23365 - 3011742..3014312 (+) 2571 WP_042772654.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18901.02 Da        Isoelectric Point: 10.4654

>NTDB_id=407666 GPY17_RS23345 WP_015297395.1 3008930..3009445(-) (pilP) [Vibrio parahaemolyticus strain 2013V-1244]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=407666 GPY17_RS23345 WP_015297395.1 3008930..3009445(-) (pilP) [Vibrio parahaemolyticus strain 2013V-1244]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCTAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAGGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GACGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

57.558

100

0.579

Multiple sequence alignment